3300009331: Microbial communities of water from the North Atlantic ocean - ACM11

Overview

Basic Information

• IMG/M Taxon OID: 3300009331
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117984 | Gp0126413 | Ga0103824
• Sample Name: Microbial communities of water from the North Atlantic ocean - ACM11
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Georgia
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 33387495
• Sequencing Scaffolds: 31
• Novel Protein Genes: 34
• Associated Families: 33

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Autographiviridae	1
All Organisms → Viruses → Predicted Viral	5
All Organisms → cellular organisms → Eukaryota → Sar	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
Not Available	10
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Cryomorphaceae	2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → Charybdisvirus → Charybdisvirus scam3	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	2
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM01	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Tamkungvirus → Tamkungvirus ST4	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Aquatic Microbial Communities From Amazon River, Brazil And North Atlantic Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → River Water → Aquatic Microbial Communities From Amazon River, Brazil And North Atlantic Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → surface water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: North Pacific Ocean
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000237	Metagenome / Metatranscriptome	1498	Y
F000744	Metagenome / Metatranscriptome	909	Y
F000820	Metagenome / Metatranscriptome	878	Y
F001707	Metatranscriptome	648	N
F001968	Metagenome / Metatranscriptome	610	Y
F002392	Metatranscriptome	564	Y
F002556	Metagenome / Metatranscriptome	548	Y
F003495	Metagenome / Metatranscriptome	483	Y
F004898	Metagenome / Metatranscriptome	419	Y
F005478	Metagenome / Metatranscriptome	399	Y
F005629	Metagenome / Metatranscriptome	394	Y
F010768	Metagenome / Metatranscriptome	299	Y
F011300	Metagenome / Metatranscriptome	292	Y
F017649	Metagenome / Metatranscriptome	239	N
F025041	Metatranscriptome	203	Y
F027881	Metagenome / Metatranscriptome	193	Y
F028361	Metagenome / Metatranscriptome	192	Y
F028825	Metagenome / Metatranscriptome	190	N
F030378	Metagenome / Metatranscriptome	185	Y
F031080	Metagenome / Metatranscriptome	183	Y
F031118	Metagenome / Metatranscriptome	183	N
F041233	Metagenome / Metatranscriptome	160	N
F052453	Metagenome / Metatranscriptome	142	Y
F053258	Metagenome / Metatranscriptome	141	N
F056566	Metagenome / Metatranscriptome	137	N
F073632	Metagenome / Metatranscriptome	120	N
F077327	Metagenome / Metatranscriptome	117	N
F081369	Metagenome / Metatranscriptome	114	N
F082390	Metagenome / Metatranscriptome	113	Y
F082393	Metagenome / Metatranscriptome	113	N
F093788	Metagenome / Metatranscriptome	106	N
F096844	Metagenome / Metatranscriptome	104	N
F101001	Metagenome / Metatranscriptome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0103824_100033	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Autographiviridae	7268
Ga0103824_100985	All Organisms → Viruses → Predicted Viral	1604
Ga0103824_101018	All Organisms → Viruses → Predicted Viral	1579
Ga0103824_101932	All Organisms → cellular organisms → Eukaryota → Sar	1200
Ga0103824_102013	All Organisms → cellular organisms → Bacteria → Proteobacteria	1179
Ga0103824_102044	All Organisms → Viruses → Predicted Viral	1172
Ga0103824_102087	All Organisms → Viruses → Predicted Viral	1161
Ga0103824_102224	Not Available	1122
Ga0103824_102486	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Cryomorphaceae	1069
Ga0103824_102850	All Organisms → Viruses → Predicted Viral	1004
Ga0103824_103001	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	978
Ga0103824_103359	Not Available	930
Ga0103824_103395	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae	926
Ga0103824_103996	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	858
Ga0103824_105010	Not Available	767
Ga0103824_105108	Not Available	761
Ga0103824_105289	Not Available	748
Ga0103824_105310	Not Available	747
Ga0103824_105782	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → Charybdisvirus → Charybdisvirus scam3	716
Ga0103824_106316	Not Available	688
Ga0103824_106368	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	686
Ga0103824_106746	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium → Strombidium inclinatum	667
Ga0103824_107449	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae	637
Ga0103824_107760	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → unclassified Kyanoviridae → Synechococcus phage S-SRM01	624
Ga0103824_108503	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Cryomorphaceae	598
Ga0103824_108726	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Tamkungvirus → Tamkungvirus ST4	591
Ga0103824_109365	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	572
Ga0103824_110253	Not Available	549
Ga0103824_110272	Not Available	548
Ga0103824_111624	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	517
Ga0103824_112213	Not Available	504

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103824_100033	Ga0103824_10003314	F082393	MNYMNLLWITLCLAILGDKRLQETWFHPAGNVIKKRGLATGYPGCELRLAAIRIENN*
Ga0103824_100985	Ga0103824_1009855	F004898	EEFRESEIYETDPQDWRGYLADDDYWLPDPELVY*
Ga0103824_101018	Ga0103824_1010181	F093788	RRWLHYPLNLSITTMTEFNPRSYILTQLAYAEEQLMIADDMTSKLTWGNRCDALEAALADLEAA*
Ga0103824_101036	Ga0103824_1010363	F028825	MSSVALQEALESFAKLTDTLQECIKYQDIERAMALAKERHDALVNLLEDADVDQTQRANCADTTLEHLRKEQLLAKSNSDQNRSDFIARKSSYRAYALKAA*
Ga0103824_101932	Ga0103824_1019321	F010768	MKEVLNGGYNVHPVPPPNSEIKERITKRYERKRSKIEKLFTLGYTTSGDP*
Ga0103824_102013	Ga0103824_1020131	F077327	FVLIFVFLTPVFGLADTSLFACGEPGKSKTENLSIDWARQSASYKSYDSVEASYWSSMIIQWTHPMQTEDTRLHEKNLSLQLNMNDMTLMYTILDEGPVLPKSDDDWAVFLPVYMVCREYF*
Ga0103824_102044	Ga0103824_1020443	F101001	MITFNWSLSAMIELWIDDEYLEDVTNSNIPEADIHYEAEHSCYRVIIRHINEMYWLTQDWGTIAEHFGFQPESVVYCH*
Ga0103824_102087	Ga0103824_1020871	F011300	MVMLLLATMMLGMWLMISALGSNDADDDDDFGGGMMIPAYNPTN*
Ga0103824_102224	Ga0103824_1022241	F027881	ERVRGVLTHASRTRIITRIDLSGVRVSNALLTFGKLTLKVNRYLVGAAA*
Ga0103824_102320	Ga0103824_1023201	F000237	IF*SLFNNIYKTYYIIFTNKHLNTDQLTRLMILHYFTP*YYLYLVKLHVLFCHES*DTDSGENTYEDKSGSYVS*FYDAFLKEIQDA*Y*TLYVFVYFFLHHFNGATVNYFFFER*NISELDEVRFYGVAPH*YFRPLMGILVISPTHYEGLM*MGLFFILLAFLPIFYNFYNVYHKYVSTIPMQNSLLQTSFFVFFMMSLYCTASMLPCGRYYYEPEGGYVGNP*VKFSYQYAYLYMA*ILHHLDLVEHYGFQYVQHLMRRHSSLKLYAQARQLPR*SSNSYLSRFSKAKVRHLRFSDAYVDVSVLNTSVKNENR*
Ga0103824_102486	Ga0103824_1024862	F041233	MKKVWIFGLLLSLAGCSYPYEEDLTVLEADTQSALTALQGLYEEGIEADYADLERHASIARTKRFDSVHEPFFRNEFEVLKYHSRQTSRWFELQTHSEWEAQLIYGLEQVQALKHDAEKGLIAEEALRQALESEKNALLPLIAEVETSCAAMRELMAEHDSLDNHWQVMWD
Ga0103824_102850	Ga0103824_1028501	F056566	IVIRLTIGLSRDGLNPITGTARVRWFNSPLQEYRHTHVSRRAILKMLWFSGDTSKGQWVNCHCLAS*
Ga0103824_103001	Ga0103824_1030012	F003495	MKENNEKKIKNEDEISIITKAPPKDTAALDKRSVLAKVNSQGSGT*
Ga0103824_103359	Ga0103824_1033591	F001707	RAQSLTFGARYARTVANPWGAEGWRHNKTDFAHWVKEASTQPNSKAKREFYGYLQMSFGDVDVDKDGKINAQEFDYLCEKVAAMPRRFGFAPSWEAEYGGSIEKRTAARKAMFDAVDSKQGAARGWIGAAQFTDWATTHIAGKIAEIDTASEVDFYHVANYSEADFLKAIEVAVTNKNSREYASLYEFLLTAFVETDATCRGEITYAEFNKLIERAAAVPRTFGLAPPDGTVEARKAIFESMDDTKTGLITFRKFLEWTVTHTAGKVEAHKAGKGYKK*
Ga0103824_103395	Ga0103824_1033951	F030378	MTSNPLSSDFSYKKYSLEQLDNWVNDAINCEDLTPQDIYDTIIKCVDESVEYHKKYLTKSIELLSLLKGHRPVEFDYTEIDEPWDYTATGEKFPRVSNTDWENFWAAEDNSQYTEEEMDAMCERAATENDKEQCREYNLREAEYYNKRAQLDADYEAIKAAGGYDWTPLPTEDKVKKWRLPVQQ
Ga0103824_103996	Ga0103824_1039963	F005478	MYDDYDLDYTFGNDQILDEDTYYEYHAQCDVDLDEDYAHNTQDYDTLAYRHYA*
Ga0103824_105010	Ga0103824_1050102	F081369	MNNGGFGAAWLDEAPMLFIIFALVFLNIIFLYVAWVQNRQRRKVERDLLAVQTFGSASPFAAKQPLSTGENHLRKETHKTIADDESLLKIDKAIAMLKIGSPLEEIRTALDIETSYLKILASHHTK*
Ga0103824_105010	Ga0103824_1050103	F031118	ARCEALTEILVEAEKLKMYRSDGTAYCEKCDNLVVRIQGVFTDVKIEDLSADEIEIIKAIKENVLSEEVFAQSSSILRNPKEWLGTLNE*
Ga0103824_105108	Ga0103824_1051081	F031080	MNEFFEIADAPGEIFDIPELQELDDENKFDVNEYLNSNYDY*
Ga0103824_105289	Ga0103824_1052892	F001968	MFDELWSEIQETPGEIFDMDIPELRDEKFDVNEYLKGDYDY*
Ga0103824_105310	Ga0103824_1053101	F002392	RTSTRQSAALRTFATVPSPWGSDTWRYDKNSFLAWCTEATSKKDSAARRELYGMLAMRFGDTDVDKDGKINAAEFDGLCEDVASLPRRFGLAPSWEKEYGTVERRTASRKAMFDMLDLRQGPPRGWIGLEQFVNWASDHLITKVATIDIHADVDYYHIEQYGEHQYLSHLEEAVSNPTSRAHASLYEFLLAIFTECDSRSTGVLTFAEFDTLLSRAAEVPRTFGLAPPEASKETRKKFFDSMEDKQMG
Ga0103824_105782	Ga0103824_1057822	F082390	MVTVNLTEQQLALMEELVGKKFDEVAQAWLPAERTKDMNKLCYDTLLNLRCVRLSKEYDETYANWDKDFYSLDKKLFLKDVGLVTDEELAQQGIC*
Ga0103824_106316	Ga0103824_1063162	F052453	MKKQPDLAAIMATYTQQHNAMMARSAANREAFAEGRPQPYQAVQSTNWHISDRD*
Ga0103824_106368	Ga0103824_1063682	F053258	MNLTNEQTELIIDAIWKRQHHFIAGDRRYREYGDLLETLEASLPYKYTRDEFK*
Ga0103824_106746	Ga0103824_1067461	F000820	IQVGKLNGENVTKSALVNLIKDTDAPITQALVQTESEVEKSDADGLFKLMDANVTRGNLKNLVTDKPAPITVALAQTEKSDADGLFKLMDANVTRGNLKNLVTDKPAPITVALAQKSDADGLFKLMDANVTRGNLKNLVTDKPAPITVALAQKSDADGLFKLMDANVTRGNLKNLVTDKPAPITVAL*
Ga0103824_107449	Ga0103824_1074493	F093788	LDPPNLSITTMTEFNPRSYILTQLAYAEEQLMIADDMYSKITWGNRCDALEAALADLEAA
Ga0103824_107760	Ga0103824_1077603	F096844	MKLSHSSVTKIADAIKPAIIEYLIADDRVTQALQDGVADGIREVMGDMDEDLFFEIGMLVFDRIEFK*
Ga0103824_108503	Ga0103824_1085031	F073632	ALSAQTTTRHHELGVQLEQSYGFMYGAPLNFKTLYKCGKTDKAVWRMQLGNIQFGHNYYEPSQQKSSWVSMGGALGREWRKDLNSNMRFFHGPLVGIEMSMSRSVSEVPPGTDNSYYYIMPNLIYVLGIQYRINQDLYVAAEIHPGFNTQFNYNDGEWSPNRYMSGGLNGQAALLSVAYQFETYKKGKSKKARGVVRIP
Ga0103824_108726	Ga0103824_1087262	F005629	MKKDIRNDSSSYYVRRTWTTFTGRVVKVDHVGPYMENQDYAVALQRQHDMRRQVPATEQITKWEWVDGVTAIADLVFD*
Ga0103824_109365	Ga0103824_1093651	F028361	MTYEQFIHKGTEFYMNMVKLIDIKLMYRMELTDDEKEINDHILEFQK
Ga0103824_110253	Ga0103824_1102531	F002556	LEQFVNWATDHLITKVATIDVHADVDYYHIEQYGEHQYLSHLEEAVTNPTSRAHASLYEFLLAIFTECDSRSTGVLTFGEFDQLLSRAAEVPRTFGLAPPEASKETRKKFFDSMEDKQMGGVTFRLLLAWTIEHSKGKIAAQKAGKGYKK*
Ga0103824_110272	Ga0103824_1102722	F017649	MILPLLLALSTPDPKLLLTCEQFDWLVERTLDTKSLSLPQKIDFIQSYSRWTDPSCFEVEE*
Ga0103824_111624	Ga0103824_1116242	F000744	MIEAEVKLNVHELGVILSALQLLELSEEKYIAREYGSASTLYNKLNTLMEQMDTSQTGIREFEEASF*
Ga0103824_112213	Ga0103824_1122131	F025041	QIGLKTTLGLVTPAVTVTVDATASTSFALSQPSGKAPSLKATLTLDSFSQRDVVFSIGEISSDDVNRDIEAILTSLLDTINADIPALPILSLPGVHYENPEFIVDNHVLLVKADFSRASVAPVIMV*