3300009330: Microbial communities of water from the North Atlantic ocean - ACM50

Overview

Basic Information

• IMG/M Taxon OID: 3300009330
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117984 | Gp0126418 | Ga0103829
• Sample Name: Microbial communities of water from the North Atlantic ocean - ACM50
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Georgia
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 30783527
• Sequencing Scaffolds: 11
• Novel Protein Genes: 15
• Associated Families: 15

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	1
All Organisms → Viruses	1
Not Available	3
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Aquatic Microbial Communities From Amazon River, Brazil And North Atlantic Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → River Water → Aquatic Microbial Communities From Amazon River, Brazil And North Atlantic Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → surface water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: North Pacific Ocean
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000075	Metagenome / Metatranscriptome	2622	Y
F000237	Metagenome / Metatranscriptome	1498	Y
F005505	Metagenome / Metatranscriptome	398	Y
F005629	Metagenome / Metatranscriptome	394	Y
F006845	Metagenome / Metatranscriptome	363	Y
F009069	Metagenome / Metatranscriptome	323	Y
F012117	Metagenome / Metatranscriptome	283	N
F028825	Metagenome / Metatranscriptome	190	N
F031080	Metagenome / Metatranscriptome	183	Y
F031118	Metagenome / Metatranscriptome	183	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0103829_100061	All Organisms → Viruses → Predicted Viral	2504
Ga0103829_101440	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	943
Ga0103829_101619	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	910
Ga0103829_101788	All Organisms → Viruses	885
Ga0103829_102733	Not Available	772
Ga0103829_103168	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	734
Ga0103829_103971	All Organisms → cellular organisms → Bacteria	682
Ga0103829_104983	All Organisms → cellular organisms → Bacteria → Proteobacteria	630
Ga0103829_107212	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	553
Ga0103829_107596	Not Available	542

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103829_100061	Ga0103829_1000611	F064740	MPLESAADFNSYVDTTTGHGVTATFFEVQSALWDARNGLIDTWYDIDSGDAYSVNIIIDQEYFSIEGGTVPVDGFQPRAIMKSSDAPYI
Ga0103829_101440	Ga0103829_1014402	F012117	MENNMVDILGGMTNPNSESQQVYLAFKTSHQQFFANGETPVEFQYLQLDPATFKSGWGRYTRADGFEYQWDEKFGVVSSKPAEDFKRAFSAWVFPQGAQHAYLWQRFTYAESSAFNSLLATFWNQMDASSTSLPVVKFEGSKPIQVGMGNSSELTFSFAKFAPRSPEFIIPSWYLDQEAPVEDTFKSPNDGLSDKVAEMVNQNELTDDDIPF*
Ga0103829_101440	Ga0103829_1014403	F006845	FEEYCRFAYDKITSACQFLGIYNDEDYESFKERCYTQLEADYLNSIEKTIH*
Ga0103829_101619	Ga0103829_1016191	F005629	SFYIRRTWTDFVGRTVKVDHVGPYMESQEFAVGLQRQHDMRRQVPATEQITKWEWVDGVTAIADLVFD*
Ga0103829_101788	Ga0103829_1017886	F093788	RDPLNLSITTMTEFNPRSYILTQLAYAEEQLMIADDMTSKLTWGNRCDALEAALADLEAA
Ga0103829_102558	Ga0103829_1025581	F028825	MTGIALQEALESFTKLTDTLQECIKSHDIEGAMALAKERHDALVNLLEHADVDQSQRANCADTTLEHLRKEQLLAKSNSDQNRSDFIARKSAYRAYAPKAA*
Ga0103829_102699	Ga0103829_1026991	F000237	F*FHYIVALGISLSATHLSDLTLTIIANIF*SIFNFIYKTYYIVFTNKHLNTDQLTRLMMFHYFTP*YYLYLVKLHVLFCHES*DSDSGENVYEDKSGSYVS*FYDAFLKEIQDA*Y*TLYVFVYFFIHHFDASTVNYHFFER*NISELDEIRFYGVAPH*YFRPLMGLLVVSPSHYEGLM*MGL*FVLLAALPIIYNLYNSNNSYLPIIPMQSSMLQTLFFILFMLSMYCTASMLPCGRYYYAPEGGYVGNP*VKFS
Ga0103829_102733	Ga0103829_1027332	F009069	MLDPVGNLPFAIEAQRSRESIENHQAQQRVQVEHNRAHKLSKALERQQLDLMLSYDKFGASNSGLQPQGQIVDMEV*
Ga0103829_103168	Ga0103829_1031681	F033052	FLKINSMEIINEIANILIFINATLFYIFVFGREIKALARLNKMEKILLRVGLSIPSMGALYNVLVGQYPPIPEIIINVGYASLWTWASIFHYNTFVKNGK*
Ga0103829_103971	Ga0103829_1039712	F031118	VTQARCEALAEILAEAEKLKLYRLDGTTYCEKCDNLVVRIQAVLTDVNVEDLSADEIEIIKSIKEKVISEEVFAQSSSILRNPKEWLGTLNE*
Ga0103829_104983	Ga0103829_1049831	F063309	EGFRALVVSSRGNSAVLLVLTGENTGDLLNTESLQNYEMDIVSEMQGRLPETRYFFQKSAAERNIKSIEYHKNELKEEIHRGDVSLWWSRARNLRKTEKTNERLDLVLEILLSEQMERRLVY*
Ga0103829_107212	Ga0103829_1072121	F005505	YFFLHHFNGATVNFFFFER*NIAELDEIRFYGVAPH*YFRPLMGILVISPTHYEGLM*MGLFFVLLAFLPIFYNFYNVYHKHVSTIPMQNSLLQTTRFILFMMSLYCTASMLPCGRYYYEPEGGYVGNP*VKFSYQYMYLYLAWIIHHLDLIDHYIFQFSQTLVRKCSSYGLRFERLNTKNLTS
Ga0103829_107596	Ga0103829_1075961	F082767	AATVTDAVVAADEAVGQTAITIDDGSGGSATVSLSEGDIIYFGSATGSDDYYTVESQTGTVLTLKEPLRAAVANNATINPVDIASGDTGREQFFYDPSALALVTAVMPSLDSGSGSGVRRAAGFEPTNNVNYTLTVEETKSGADVLIEVLYGTKVFRPDLGGRYIRGNVSKA*
Ga0103829_108136	Ga0103829_1081361	F000075	AAANQFDHMNEDELLVNLESTLSSALSSEARGDGDAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQPQINDMERRLGIMQSVEPVLENAIKTLQKVVDVRGMGKK*
Ga0103829_108237	Ga0103829_1082372	F031080	MNDFFDIVDAPGEIYDIPEMQDLDDENKFDVNEYLN