3300009329: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, May cruise - 900m, 2.7-0.2um, replicate b

Overview

Basic Information

• IMG/M Taxon OID: 3300009329
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118094 | Gp0137038 | Ga0117912
• Sample Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, May cruise - 900m, 2.7-0.2um, replicate b
• Sequencing Status: Permanent Draft
• Sequencing Center: Georgia Genomics Facility
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 394865577
• Sequencing Scaffolds: 2
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal water body → coastal sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031797	Metagenome / Metatranscriptome	181	Y
F037999	Metagenome / Metatranscriptome	167	Y
F060598	Metagenome / Metatranscriptome	132	Y
F083361	Metagenome / Metatranscriptome	113	Y
F085858	Metagenome / Metatranscriptome	111	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0117912_1038520	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	2113
Ga0117912_1104141	Not Available	993

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0117912_1005413	Ga0117912_100541311	F031797	CFALWQLDPVSRERAKEMGMELRSTAAGPNHIRVELELKPEGELKDFGRVDLHFGEGDNPPLTAPLREDRSKPGRVVVNFTAKRTQLDKIKLWVIVPFMTGGTAYELRVNDFVELGKNR*
Ga0117912_1038520	Ga0117912_10385205	F085858	DIKEFNEVVKCKTIPTTFVFRCTLCGFEMTNYDRHLGLIKMNEHIVSNHSTEVNSLGREDLYSRKMEIELDSF*
Ga0117912_1072651	Ga0117912_10726511	F037999	WKAVEAFIRRENDEGRDALIEGVAVLPELMSQLEDIPHRVVFIGNQGENHKENIKKSAEENEHDWMRDVSDQYIGAFAMFVKRMSAYIEQEAKKYGFEYIEMDKELFGDVTEEVMKSLGLSAR*
Ga0117912_1086977	Ga0117912_10869771	F083361	VNVQIDLSGCTLSIENQAVVDAINKFLVLLPDDADHKAALRLAMVILEAADVAPQADLARAADFAQSRSLRDYKQRLREEGLSGLWDHPIPGRPAITTRTPVEKALFQVILSAVIEEHALPDDVTLADRVNQALSEAQVPEAGRVTAPMVETIRLRWEIRRPTLTQQLQATRQPVAAETDLARLGQTRVGGAFILAMLLVETGWLKLAHLLPMAANYAVTATQWLLTAIFAVIYGVRRAFHLDDVRDIGFALLTGRPRPLTHGTFQHLLRAIPAEDAEKFYQASAHLEVQALGEGTRRISLDGHNLPRYTRVVDLVKGKIGNTGRVLKAEELVLAYDLDGHLWLGL
Ga0117912_1104141	Ga0117912_11041411	F060598	GHLWLGLRAYHGTKKLSKGLVEIVRELLNHRGSLKGLLRLFFDKGGYSGQIFLALSEESQVHFYTPAVRYPNNVAQWEQLQESDFDADTFVFDKHADLPVEQRPVYRLADTEMTINVRERNKVVGTVTHRAVELHDPQGEKPAERWPIVLLTDDYEIDARALLNEFGDHWGQEVAHRIGKHDLHLDILPPGYILKTRRDDQGQLHREVEYDQTAFFLSAWLRCLVFNLMSRFAQAMGGEYIKMWAGTLLRKFIRRPATLYLVGKELHVVFDPFPDQDELQPLLDELNAKRTALPWLNNLVVQLSIAQDEPLHPLTEHEKRNRLFGDG*