Metagenome / Metatranscriptome Family F085858

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F085858
Family Type	Metagenome / Metatranscriptome
Number of Sequences	111
Average Sequence Length	72 residues
Representative Sequence	MDMKEFKEVVKLKIIPTTFVFRCTLCGFEMTNYDRHFGLIKMNEHIISNHSTEVNSLGKEDLYSRKPEIVLDRF
Number of Associated Samples	79
Number of Associated Scaffolds	111

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	76.58 %
% of genes near scaffold ends (potentially truncated)	27.03 %
% of genes from short scaffolds (< 2000 bps)	81.08 %
Associated GOLD sequencing projects	70
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.74

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (56.757 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen (7.207 % of family members)
Environment Ontology (ENVO)	Unclassified (30.631 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (30.631 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 23.53% β-sheet: 21.57% Coil/Unstructured: 54.90%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.74
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.74
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SCOP family	SCOP domain	Representative PDB	TM-score
c.55.1.0: automated matches	d2w40a1	2w40	0.59022
c.55.7.1: Methylated DNA-protein cysteine methyltransferase domain	d1mgta2	1mgt	0.58156
c.55.4.1: Ribosomal protein L18 and S11	d1vq8n1	1vq8	0.5775
d.304.1.1: TTHA1013-like	d1wv8a1	1wv8	0.57744
c.55.4.1: Ribosomal protein L18 and S11	d1fjgk_	1fjg	0.5679

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 111 Family Scaffolds
PF01713	Smr	2.70
PF16901	DAO_C	2.70
PF03950	tRNA-synt_1c_C	2.70
PF00481	PP2C	1.80
PF13247	Fer4_11	1.80
PF00890	FAD_binding_2	1.80
PF00701	DHDPS	1.80
PF01370	Epimerase	1.80
PF00291	PALP	0.90
PF00528	BPD_transp_1	0.90
PF12697	Abhydrolase_6	0.90
PF02810	SEC-C	0.90
PF06197	DUF998	0.90
PF02518	HATPase_c	0.90
PF09723	Zn-ribbon_8	0.90
PF12900	Pyridox_ox_2	0.90
PF00248	Aldo_ket_red	0.90
PF00459	Inositol_P	0.90
PF00483	NTP_transferase	0.90
PF03725	RNase_PH_C	0.90
PF00689	Cation_ATPase_C	0.90
PF07963	N_methyl	0.90
PF02597	ThiS	0.90
PF10604	Polyketide_cyc2	0.90
PF03358	FMN_red	0.90
PF02515	CoA_transf_3	0.90
PF13495	Phage_int_SAM_4	0.90
PF13545	HTH_Crp_2	0.90
PF00293	NUDIX	0.90
PF00571	CBS	0.90
PF03099	BPL_LplA_LipB	0.90
PF13483	Lactamase_B_3	0.90
PF01641	SelR	0.90
PF03480	DctP	0.90
PF02965	Met_synt_B12	0.90
PF04024	PspC	0.90
PF13602	ADH_zinc_N_2	0.90
PF03486	HI0933_like	0.90
PF02540	NAD_synthase	0.90
PF07992	Pyr_redox_2	0.90
PF11756	YgbA_NO	0.90
PF04972	BON	0.90
PF02368	Big_2	0.90
PF03819	MazG	0.90
PF00378	ECH_1	0.90
PF00589	Phage_integrase	0.90
PF06050	HGD-D	0.90

COG ID	Name	Functional Category	% Frequency in 111 Family Scaffolds
COG0329	4-hydroxy-tetrahydrodipicolinate synthase/N-acetylneuraminate lyase	Cell wall/membrane/envelope biogenesis [M]	3.60
COG0008	Glutamyl- or glutaminyl-tRNA synthetase	Translation, ribosomal structure and biogenesis [J]	2.70
COG0654	2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases	Energy production and conversion [C]	1.80
COG0631	Serine/threonine protein phosphatase PrpC	Signal transduction mechanisms [T]	1.80
COG0493	NADPH-dependent glutamate synthase beta chain or related oxidoreductase	Amino acid transport and metabolism [E]	1.80
COG1977	Molybdopterin synthase sulfur carrier subunit MoaD	Coenzyme transport and metabolism [H]	0.90
COG1249	Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex or glutathione oxidoreductase	Energy production and conversion [C]	0.90
COG1410	Methionine synthase I, cobalamin-binding domain	Amino acid transport and metabolism [E]	0.90
COG1775	Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB	Amino acid transport and metabolism [E]	0.90
COG1804	Crotonobetainyl-CoA:carnitine CoA-transferase CaiB and related acyl-CoA transferases	Lipid transport and metabolism [I]	0.90
COG0689	Ribonuclease PH	Translation, ribosomal structure and biogenesis [J]	0.90
COG2072	Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD	Inorganic ion transport and metabolism [P]	0.90
COG2081	Predicted flavoprotein YhiN	General function prediction only [R]	0.90
COG2104	Sulfur carrier protein ThiS (thiamine biosynthesis)	Coenzyme transport and metabolism [H]	0.90
COG2123	Exosome complex RNA-binding protein Rrp42, RNase PH superfamily	Intracellular trafficking, secretion, and vesicular transport [U]	0.90
COG2509	FAD-dependent dehydrogenase	General function prediction only [R]	0.90
COG3371	Uncharacterized membrane protein	Function unknown [S]	0.90
COG3634	Alkyl hydroperoxide reductase subunit AhpF	Defense mechanisms [V]	0.90
COG1185	Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase)	Translation, ribosomal structure and biogenesis [J]	0.90
COG1053	Succinate dehydrogenase/fumarate reductase, flavoprotein subunit	Energy production and conversion [C]	0.90
COG0644	Dehydrogenase (flavoprotein)	Energy production and conversion [C]	0.90
COG0492	Thioredoxin reductase	Posttranslational modification, protein turnover, chaperones [O]	0.90
COG0474	Magnesium-transporting ATPase (P-type)	Inorganic ion transport and metabolism [P]	0.90
COG0446	NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase, or a related oxidoreductase	Lipid transport and metabolism [I]	0.90
COG0340	Biotin-protein ligase	Coenzyme transport and metabolism [H]	0.90
COG0321	Lipoate-protein ligase B	Coenzyme transport and metabolism [H]	0.90
COG0229	Peptide methionine sulfoxide reductase MsrB	Posttranslational modification, protein turnover, chaperones [O]	0.90
COG0171	NH3-dependent NAD+ synthetase	Coenzyme transport and metabolism [H]	0.90
COG0095	Lipoate-protein ligase A	Coenzyme transport and metabolism [H]	0.90
COG0029	Aspartate oxidase	Coenzyme transport and metabolism [H]	0.90

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	57.66 %
Unclassified	root	N/A	42.34 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	57.66 %
Unclassified	root	N/A	42.34 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	56.76 %
Unclassified	root	N/A	42.34 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.34 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	29.73 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	4.50 %
unclassified Bacteria	no rank	All Organisms → cellular organisms → Bacteria → unclassified Bacteria	1.80 %
Opisthokonta	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.34 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	27.93 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	1.80 %
bacterium ADurb.Bin212	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium ADurb.Bin212	1.80 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.90 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.90 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.90 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.90 %
Metazoa	kingdom	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.34 %
Dehalococcoidia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	12.61 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.80 %
bacterium ADurb.Bin212	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium ADurb.Bin212	1.80 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.90 %
Eumetazoa	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa	0.90 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	0.90 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.90 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.90 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.34 %
unclassified Dehalococcoidia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia	3.60 %
bacterium ADurb.Bin212	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium ADurb.Bin212	1.80 %
Chloroflexi bacterium RBG_16_60_22	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_60_22	0.90 %
Betaproteobacteria bacterium RBG_16_64_18	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RBG_16_64_18	0.90 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	0.90 %
Bilateria	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria	0.90 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.90 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.90 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.34 %
Dehalococcoidia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	3.60 %
bacterium ADurb.Bin212	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium ADurb.Bin212	1.80 %
Deltaproteobacteria bacterium RBG_13_43_22	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RBG_13_43_22	0.90 %
Protostomia	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia	0.90 %
Chloroflexi bacterium RBG_16_60_22	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_60_22	0.90 %
Betaproteobacteria bacterium RBG_16_64_18	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RBG_16_64_18	0.90 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.90 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.90 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.34 %
Dehalococcoidia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	3.60 %
bacterium ADurb.Bin212	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium ADurb.Bin212	1.80 %
Ecdysozoa	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa	0.90 %
Deltaproteobacteria bacterium RBG_13_43_22	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RBG_13_43_22	0.90 %
Chloroflexi bacterium RBG_16_60_22	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_60_22	0.90 %
Betaproteobacteria bacterium RBG_16_64_18	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RBG_16_64_18	0.90 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.90 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.90 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.34 %
Dehalococcoidia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	3.60 %
bacterium ADurb.Bin212	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium ADurb.Bin212	1.80 %
Nematoda	phylum	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda	0.90 %
Deltaproteobacteria bacterium RBG_13_43_22	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RBG_13_43_22	0.90 %
Chloroflexi bacterium RBG_16_60_22	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_60_22	0.90 %
Betaproteobacteria bacterium RBG_16_64_18	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RBG_16_64_18	0.90 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.90 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.90 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.34 %
Dehalococcoidia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	3.60 %
bacterium ADurb.Bin212	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium ADurb.Bin212	1.80 %
Chromadorea	class	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea	0.90 %
Deltaproteobacteria bacterium RBG_13_43_22	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RBG_13_43_22	0.90 %
Chloroflexi bacterium RBG_16_60_22	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_60_22	0.90 %
Betaproteobacteria bacterium RBG_16_64_18	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RBG_16_64_18	0.90 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.90 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.90 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.34 %
Dehalococcoidia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	3.60 %
bacterium ADurb.Bin212	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium ADurb.Bin212	1.80 %
Rhabditida	order	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida	0.90 %
Deltaproteobacteria bacterium RBG_13_43_22	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RBG_13_43_22	0.90 %
Chloroflexi bacterium RBG_16_60_22	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_60_22	0.90 %
Betaproteobacteria bacterium RBG_16_64_18	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RBG_16_64_18	0.90 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.90 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.90 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.34 %
Dehalococcoidia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	3.60 %
bacterium ADurb.Bin212	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium ADurb.Bin212	1.80 %
Tylenchina	suborder	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Tylenchina	0.90 %
Deltaproteobacteria bacterium RBG_13_43_22	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RBG_13_43_22	0.90 %
Chloroflexi bacterium RBG_16_60_22	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_60_22	0.90 %
Betaproteobacteria bacterium RBG_16_64_18	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RBG_16_64_18	0.90 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.90 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.90 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.34 %
Dehalococcoidia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	3.60 %
bacterium ADurb.Bin212	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium ADurb.Bin212	1.80 %
Panagrolaimomorpha	infraorder	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Tylenchina → Panagrolaimomorpha	0.90 %
Deltaproteobacteria bacterium RBG_13_43_22	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RBG_13_43_22	0.90 %
Chloroflexi bacterium RBG_16_60_22	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_60_22	0.90 %
Betaproteobacteria bacterium RBG_16_64_18	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RBG_16_64_18	0.90 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.90 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.90 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.34 %
Dehalococcoidia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	3.60 %
bacterium ADurb.Bin212	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium ADurb.Bin212	1.80 %
Strongyloidoidea	superfamily	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Tylenchina → Panagrolaimomorpha → Strongyloidoidea	0.90 %
Deltaproteobacteria bacterium RBG_13_43_22	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RBG_13_43_22	0.90 %
Chloroflexi bacterium RBG_16_60_22	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_60_22	0.90 %
Betaproteobacteria bacterium RBG_16_64_18	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RBG_16_64_18	0.90 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.90 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.90 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.34 %
Dehalococcoidia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	3.60 %
bacterium ADurb.Bin212	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium ADurb.Bin212	1.80 %
Strongyloididae	family	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Tylenchina → Panagrolaimomorpha → Strongyloidoidea → Strongyloididae	0.90 %
Deltaproteobacteria bacterium RBG_13_43_22	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RBG_13_43_22	0.90 %
Chloroflexi bacterium RBG_16_60_22	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_60_22	0.90 %
Betaproteobacteria bacterium RBG_16_64_18	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RBG_16_64_18	0.90 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.90 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.90 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.34 %
Dehalococcoidia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	3.60 %
bacterium ADurb.Bin212	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium ADurb.Bin212	1.80 %
Parastrongyloides	genus	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Tylenchina → Panagrolaimomorpha → Strongyloidoidea → Strongyloididae → Parastrongyloides	0.90 %
Deltaproteobacteria bacterium RBG_13_43_22	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RBG_13_43_22	0.90 %
Chloroflexi bacterium RBG_16_60_22	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_60_22	0.90 %
Betaproteobacteria bacterium RBG_16_64_18	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RBG_16_64_18	0.90 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.90 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.90 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.34 %
Dehalococcoidia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	3.60 %
bacterium ADurb.Bin212	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium ADurb.Bin212	1.80 %
Parastrongyloides trichosuri	species	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Tylenchina → Panagrolaimomorpha → Strongyloidoidea → Strongyloididae → Parastrongyloides → Parastrongyloides trichosuri	0.90 %
Deltaproteobacteria bacterium RBG_13_43_22	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RBG_13_43_22	0.90 %
Chloroflexi bacterium RBG_16_60_22	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_60_22	0.90 %
Betaproteobacteria bacterium RBG_16_64_18	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RBG_16_64_18	0.90 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.90 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.90 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.90 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908004\|PBDC3_contig38816	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	507	Open in IMG/M
3300000032\|Draft_c0022357	Not Available	987	Open in IMG/M
3300001213\|JGIcombinedJ13530_103368515	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	4531	Open in IMG/M
3300001213\|JGIcombinedJ13530_103634311	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RBG_16_64_18	2370	Open in IMG/M
3300001213\|JGIcombinedJ13530_105732858	Not Available	910	Open in IMG/M
3300001213\|JGIcombinedJ13530_106824854	All Organisms → cellular organisms → Bacteria	1114	Open in IMG/M
3300002053\|SMTZ23_10003449	All Organisms → cellular organisms → Bacteria	29614	Open in IMG/M
3300002219\|SCADCLC_10215924	Not Available	663	Open in IMG/M
3300002220\|MLSBCLC_10498377	Not Available	710	Open in IMG/M
3300002220\|MLSBCLC_10544719	All Organisms → cellular organisms → Bacteria	1718	Open in IMG/M
3300002821\|Iso3TCLC_10006993	All Organisms → cellular organisms → Bacteria	29649	Open in IMG/M
3300003432\|JGI20214J51088_10159793	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1592	Open in IMG/M
3300003432\|JGI20214J51088_10765451	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	623	Open in IMG/M
3300003541\|JGI20214J51650_10332942	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	1055	Open in IMG/M
3300003541\|JGI20214J51650_11144214	Not Available	541	Open in IMG/M
3300003852\|Ga0031655_10062387	Not Available	1588	Open in IMG/M
3300004459\|Ga0065201_1609959	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium ADurb.Bin212	630	Open in IMG/M
3300005144\|Ga0068711_1000568	All Organisms → cellular organisms → Bacteria	30327	Open in IMG/M
3300005252\|Ga0068712_1015854	All Organisms → cellular organisms → Bacteria	4248	Open in IMG/M
3300005504\|Ga0074230_1912979	Not Available	509	Open in IMG/M
3300005832\|Ga0074469_10726304	Not Available	1295	Open in IMG/M
3300006224\|Ga0079037_101108830	Not Available	785	Open in IMG/M
3300007918\|Ga0111545_1061566	Not Available	664	Open in IMG/M
3300008416\|Ga0115362_102055987	Not Available	551	Open in IMG/M
3300009078\|Ga0105106_10048930	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	3125	Open in IMG/M
3300009078\|Ga0105106_10314860	All Organisms → cellular organisms → Bacteria	1132	Open in IMG/M
3300009082\|Ga0105099_10275894	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	980	Open in IMG/M
3300009087\|Ga0105107_11267781	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	514	Open in IMG/M
3300009127\|Ga0118724_1005496	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	16340	Open in IMG/M
3300009127\|Ga0118724_1046349	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	3223	Open in IMG/M
3300009127\|Ga0118724_1051450	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	2951	Open in IMG/M
3300009127\|Ga0118724_1116524	All Organisms → cellular organisms → Bacteria	1507	Open in IMG/M
3300009127\|Ga0118724_1211607	Not Available	940	Open in IMG/M
3300009165\|Ga0105102_10253171	Not Available	897	Open in IMG/M
3300009167\|Ga0113563_11709793	Not Available	746	Open in IMG/M
3300009167\|Ga0113563_12031695	Not Available	687	Open in IMG/M
3300009167\|Ga0113563_12210173	Not Available	660	Open in IMG/M
3300009169\|Ga0105097_10261760	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	953	Open in IMG/M
3300009179\|Ga0115028_10899489	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	700	Open in IMG/M
3300009329\|Ga0117912_1038520	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	2113	Open in IMG/M
3300009506\|Ga0118657_10525681	All Organisms → cellular organisms → Bacteria	1526	Open in IMG/M
3300009506\|Ga0118657_10826507	All Organisms → cellular organisms → Bacteria → Proteobacteria	1152	Open in IMG/M
3300009506\|Ga0118657_12536888	Not Available	578	Open in IMG/M
3300009542\|Ga0116234_1247418	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium RBG_16_60_22	1043	Open in IMG/M
3300009680\|Ga0123335_1195426	All Organisms → cellular organisms → Bacteria	1049	Open in IMG/M
3300010310\|Ga0116235_1085325	All Organisms → cellular organisms → Bacteria	922	Open in IMG/M
3300010319\|Ga0136653_10064552	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1815	Open in IMG/M
3300010413\|Ga0136851_10557429	All Organisms → cellular organisms → Bacteria	1138	Open in IMG/M
3300010413\|Ga0136851_11702517	Not Available	605	Open in IMG/M
3300012931\|Ga0153915_10060649	All Organisms → cellular organisms → Bacteria	3908	Open in IMG/M
3300012931\|Ga0153915_10165424	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2407	Open in IMG/M
3300012931\|Ga0153915_10731402	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	1144	Open in IMG/M
3300012931\|Ga0153915_12315029	Not Available	629	Open in IMG/M
3300012964\|Ga0153916_10624188	Not Available	1155	Open in IMG/M
3300012964\|Ga0153916_12124537	Not Available	630	Open in IMG/M
3300012964\|Ga0153916_13272581	Not Available	509	Open in IMG/M
3300013088\|Ga0163200_1183385	Not Available	649	Open in IMG/M
(restricted) 3300013137\|Ga0172375_10000100	All Organisms → cellular organisms → Bacteria	124423	Open in IMG/M
3300014490\|Ga0182010_10737732	Not Available	556	Open in IMG/M
3300014496\|Ga0182011_10576114	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	718	Open in IMG/M
3300014498\|Ga0182019_10213289	Not Available	1254	Open in IMG/M
3300014498\|Ga0182019_10220047	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1236	Open in IMG/M
3300014502\|Ga0182021_10837985	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1105	Open in IMG/M
3300014502\|Ga0182021_11195577	All Organisms → cellular organisms → Bacteria	916	Open in IMG/M
3300014502\|Ga0182021_11687075	Not Available	763	Open in IMG/M
3300014839\|Ga0182027_10907195	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	911	Open in IMG/M
3300014903\|Ga0164321_10120825	Not Available	1119	Open in IMG/M
3300014903\|Ga0164321_10460929	Not Available	635	Open in IMG/M
3300015214\|Ga0172382_10069994	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	3381	Open in IMG/M
3300015214\|Ga0172382_10186242	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1741	Open in IMG/M
3300017998\|Ga0187870_1200020	Not Available	703	Open in IMG/M
3300018005\|Ga0187878_1274123	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	609	Open in IMG/M
3300018020\|Ga0187861_10386601	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	588	Open in IMG/M
3300018024\|Ga0187881_10136458	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1079	Open in IMG/M
3300018024\|Ga0187881_10481502	Not Available	505	Open in IMG/M
3300020814\|Ga0214088_1687955	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	640	Open in IMG/M
3300021603\|Ga0226659_10518955	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	508	Open in IMG/M
3300021843\|Ga0226657_10171664	All Organisms → cellular organisms → Bacteria	868	Open in IMG/M
3300022556\|Ga0212121_10002905	All Organisms → cellular organisms → Bacteria	18251	Open in IMG/M
3300023207\|Ga0255811_10498413	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1393	Open in IMG/M
3300025136\|Ga0209610_1270467	Not Available	518	Open in IMG/M
3300026311\|Ga0209723_1124807	All Organisms → cellular organisms → Bacteria	1030	Open in IMG/M
3300027051\|Ga0209269_1000616	All Organisms → cellular organisms → Bacteria	30327	Open in IMG/M
3300027592\|Ga0209270_1170825	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium ADurb.Bin212	528	Open in IMG/M
(restricted) 3300027856\|Ga0255054_10174783	Not Available	1057	Open in IMG/M
(restricted) 3300027868\|Ga0255053_10380820	Not Available	682	Open in IMG/M
3300027888\|Ga0209635_10029220	All Organisms → cellular organisms → Bacteria	4461	Open in IMG/M
3300027896\|Ga0209777_10000099	All Organisms → cellular organisms → Bacteria	145043	Open in IMG/M
3300027896\|Ga0209777_10175575	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Tylenchina → Panagrolaimomorpha → Strongyloidoidea → Strongyloididae → Parastrongyloides → Parastrongyloides trichosuri	1744	Open in IMG/M
3300027896\|Ga0209777_10188364	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RBG_13_43_22	1669	Open in IMG/M
3300027896\|Ga0209777_10638418	Not Available	765	Open in IMG/M
3300027896\|Ga0209777_10872476	Not Available	626	Open in IMG/M
3300027901\|Ga0209427_10689034	Not Available	739	Open in IMG/M
3300027902\|Ga0209048_10519689	Not Available	802	Open in IMG/M
3300027917\|Ga0209536_101395884	Not Available	855	Open in IMG/M
3300028299\|Ga0268276_1229974	Not Available	547	Open in IMG/M
3300029288\|Ga0265297_10052653	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	3577	Open in IMG/M
3300029799\|Ga0311022_12623897	Not Available	530	Open in IMG/M
3300030019\|Ga0311348_11439462	Not Available	512	Open in IMG/M
3300031277\|Ga0307425_1103691	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	917	Open in IMG/M
3300031341\|Ga0307418_1201778	Not Available	503	Open in IMG/M
3300031371\|Ga0307423_1022851	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2338	Open in IMG/M
3300031551\|Ga0315548_1134461	Not Available	894	Open in IMG/M
3300031699\|Ga0315535_1069574	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1359	Open in IMG/M
3300031862\|Ga0315280_10139591	Not Available	1550	Open in IMG/M
3300031999\|Ga0315274_11965939	Not Available	527	Open in IMG/M
3300032177\|Ga0315276_12399810	Not Available	530	Open in IMG/M
3300032276\|Ga0316188_10581752	Not Available	604	Open in IMG/M
3300033408\|Ga0316605_10887110	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	852	Open in IMG/M
3300033408\|Ga0316605_11069722	All Organisms → cellular organisms → Bacteria	776	Open in IMG/M
3300033487\|Ga0316630_10349829	All Organisms → cellular organisms → Bacteria	1160	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	79.28%
Engineered	Engineered	20.72%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	68.47%
Terrestrial	Environmental → Terrestrial	10.81%
Bioreactor	Engineered → Bioreactor	8.11%
Lab Enrichment	Engineered → Lab Enrichment	5.41%
Solid Waste	Engineered → Solid Waste	4.50%
Wastewater	Engineered → Wastewater	2.70%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	34.23%
Marine	Environmental → Aquatic → Marine	27.93%
Soil	Environmental → Terrestrial → Soil	9.91%
Anaerobic	Engineered → Bioreactor → Anaerobic	8.11%
Sediment	Environmental → Aquatic → Sediment	5.41%
Defined Media	Engineered → Lab Enrichment → Defined Media	5.41%
Landfill	Engineered → Solid Waste → Landfill	2.70%
Industrial Wastewater	Engineered → Wastewater → Industrial Wastewater	2.70%
Wood	Engineered → Solid Waste → Wood	1.80%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	0.90%
Peat	Environmental → Terrestrial → Peat	0.90%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	14.41%
Wetlands	Environmental → Aquatic → Marine → Wetlands	9.91%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	9.91%
Unclassified	Engineered → Bioreactor → Anaerobic → Unclassified	8.11%
Lake	Environmental → Aquatic → Freshwater → Lake	7.21%
Sediment	Environmental → Aquatic → Freshwater → Sediment	6.31%
Lentic	Environmental → Aquatic → Freshwater → Lentic	6.31%
Coastal	Environmental → Aquatic → Marine → Coastal	6.31%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	5.41%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	5.41%
Anaerobic Media	Engineered → Lab Enrichment → Defined Media → Anaerobic Media	5.41%
Oceanic	Environmental → Aquatic → Marine → Oceanic	2.70%
Unclassified	Engineered → Solid Waste → Landfill → Unclassified	2.70%
Petrochemical	Engineered → Wastewater → Industrial Wastewater → Petrochemical	2.70%
Inlet	Environmental → Aquatic → Marine → Inlet	1.80%
Hydrothermal Vents	Environmental → Aquatic → Marine → Hydrothermal Vents	1.80%
Composting	Engineered → Solid Waste → Wood → Composting	1.80%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	0.90%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	9.91%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	9.91%
Unclassified	Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified	8.11%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	7.21%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	6.31%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	6.31%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	5.41%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	5.41%
Unclassified	Engineered → Lab Enrichment → Defined Media → Anaerobic Media → Unclassified	5.41%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	4.50%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	4.50%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	4.50%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	2.70%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment	2.70%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.70%
Unclassified	Engineered → Solid Waste → Landfill → Unclassified → Unclassified	2.70%
Unclassified	Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified	2.70%
Unclassified	Environmental → Aquatic → Marine → Inlet → Unclassified	1.80%
Sediment	Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment	1.80%
Bioreactor	Engineered → Solid Waste → Wood → Composting → Bioreactor	1.80%
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment	0.90%
Sediment	Environmental → Aquatic → Marine → Intertidal Zone → Sediment	0.90%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	0.90%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.90%

Habitat	Taxonomy	Distribution
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	7.21%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	7.21%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	6.31%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	6.31%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	5.41%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	5.41%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	4.50%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	3.60%
Enrichment Culture	Engineered → Lab Enrichment → Defined Media → Anaerobic Media → Unclassified → Enrichment Culture	3.60%
Anaerobic Biogas Reactor	Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Biogas Reactor	3.60%
Anoxic Lake Water	Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Lake Water	2.70%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	2.70%
Marine Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment → Marine Sediment	2.70%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	2.70%
Mangrove Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment → Mangrove Sediment	2.70%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.70%
Landfill Leachate	Engineered → Solid Waste → Landfill → Unclassified → Unclassified → Landfill Leachate	2.70%
Hydrocarbon Resource Environments	Engineered → Wastewater → Industrial Wastewater → Petrochemical → Unclassified → Hydrocarbon Resource Environments	2.70%
Anaerobic Digester Digestate	Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Anaerobic Digester Digestate	2.70%
Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater	1.80%
Seawater	Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater	1.80%
Salt Marsh Sediment	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh Sediment	1.80%
Marine Sediment	Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment	1.80%
Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment	1.80%
Mangrove Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Mangrove Sediment	1.80%
Poplar Biomass Bioreactor	Engineered → Solid Waste → Wood → Composting → Bioreactor → Poplar Biomass Bioreactor	1.80%
Hydrocarbon Resource Environments	Engineered → Lab Enrichment → Defined Media → Anaerobic Media → Unclassified → Hydrocarbon Resource Environments	1.80%
Granular Sludge	Engineered → Bioreactor → Anaerobic → Unclassified → Unclassified → Granular Sludge	1.80%
Wetland	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland	0.90%
Worm Burrow	Environmental → Aquatic → Marine → Coastal → Sediment → Worm Burrow	0.90%
Marine Sediment	Environmental → Aquatic → Marine → Intertidal Zone → Sediment → Marine Sediment	0.90%
Saline Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water	0.90%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.90%
Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment	0.90%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.90%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908004	Poplar biomass bioreactor microbial communities from Brookhaven National Lab, NY - total biomass decay community	Engineered	Open in IMG/M
3300000032	Oil sands microbial community from Northern Alberta which degrade Naphthaline	Engineered	Open in IMG/M
3300001213	Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)	Environmental	Open in IMG/M
3300002053	Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR_SMTZ	Environmental	Open in IMG/M
3300002219	Tailings pond microbial communities from Northern Alberta -Short chain hydrocarbon degrading methanogenic enrichment culture SCADC:	Engineered	Open in IMG/M
3300002220	Wastewater microbial communities from Syncrude, Ft. McMurray, Alberta - West In Pit SyncrudeMLSB2011	Engineered	Open in IMG/M
3300002821	Iso-alkanes.Hi.seq-Iso3T	Engineered	Open in IMG/M
3300003432	Wetland sediment microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site B2 Bulk	Environmental	Open in IMG/M
3300003541	Wetland sediment microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site B2 Bulk	Environmental	Open in IMG/M
3300003852	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies -HBP12 HB	Environmental	Open in IMG/M
3300004459	Marine microbial communities from Galveston Bay (MSEDA12C- fraction 11)	Environmental	Open in IMG/M
3300005144	Enrichment culture microbial communities from Arthur Kill intertidal strait, New Jersey, USA, that are MTBE-degrading - MTBE-AKM (Arthur Kill Methanogenic) MetaG	Engineered	Open in IMG/M
3300005252	Enrichment culture microbial communities from Arthur Kill intertidal strait, New Jersey, USA, that are MTBE-degrading - MTBE-AKS1 (Arthur Kill Sulfidogenic replicate 1) MetaG	Engineered	Open in IMG/M
3300005504	Poplar biomass bioreactor microbial communities from Brookhaven National Lab, NY - total biomass decay community	Engineered	Open in IMG/M
3300005832	Microbial communities from Baker Bay sediment, Columbia River estuary, Washington - S.41_BBB	Environmental	Open in IMG/M
3300006224	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 4 metaG	Environmental	Open in IMG/M
3300007918	Microbial communities from sediment of the River Tyne Estuary, UK ? Pasteurized_176d_2	Environmental	Open in IMG/M
3300008416	Sea floor sediment microbial communities from Gulf of Mexico Methane Seep - MPC12B	Environmental	Open in IMG/M
3300009078	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm September2015	Environmental	Open in IMG/M
3300009082	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 1-3cm May2015	Environmental	Open in IMG/M
3300009087	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009127	Combined Assembly of Gp0137036, Gp0137038	Environmental	Open in IMG/M
3300009165	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 1-3cm September2015	Environmental	Open in IMG/M
3300009167	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG - Illumina Assembly (version 2)	Environmental	Open in IMG/M
3300009169	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm May2015	Environmental	Open in IMG/M
3300009179	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_0915_D1	Environmental	Open in IMG/M
3300009329	Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, May cruise - 900m, 2.7-0.2um, replicate b	Environmental	Open in IMG/M
3300009506	Mangrove sediment microbial communities from Mai Po Nature Reserve Marshes in Hong Kong, China - Maipo_8	Environmental	Open in IMG/M
3300009542	Anaerobic biogas reactor microbial communites from Washington, USA - Biogas_R2_A SIP RNA (Metagenome Metatranscriptome)	Engineered	Open in IMG/M
3300009680	Anaerobic biogas reactor microbial communites from Washington, USA - Biogas_R2 time_0 SIP DNA	Engineered	Open in IMG/M
3300010310	Anaerobic biogas reactor microbial communites from Washington, USA - Biogas_R2_B SIP RNA (Metagenome Metatranscriptome)	Engineered	Open in IMG/M
3300010319	Anoxic lake water microbial communities from Lake Kivu, Rwanda to study Microbial Dark Matter (Phase II) - Lake Kivu water 275m metaG	Environmental	Open in IMG/M
3300010413	Mangrove sediment microbial communities from Mai Po Nature Reserve Marshes in Hong Kong, China - Maipo_9	Environmental	Open in IMG/M
3300012931	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaG	Environmental	Open in IMG/M
3300012964	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 4 metaG	Environmental	Open in IMG/M
3300013088	Freshwater microbial communities from Powell Lake, British Columbia, Canada to study Microbial Dark Matter (Phase II) - PL_2010_200m	Environmental	Open in IMG/M
3300013137 (restricted)	Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_092012_11.1m	Environmental	Open in IMG/M
3300014490	Permafrost microbial communities from Stordalen Mire, Sweden - 611E1M metaG	Environmental	Open in IMG/M
3300014496	Permafrost microbial communities from Stordalen Mire, Sweden - 711E1D metaG	Environmental	Open in IMG/M
3300014498	Permafrost microbial communities from Stordalen Mire, Sweden - 812E2M metaG	Environmental	Open in IMG/M
3300014502	Permafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014839	Permafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014903	Subseafloor sediment microbial communities from Guaymas Basin, Gulf of California, Mexico - Guay12, Core 4567-28, 21-24 cm	Environmental	Open in IMG/M
3300015214	Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 138R metaG	Engineered	Open in IMG/M
3300017998	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_150	Environmental	Open in IMG/M
3300018005	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_150	Environmental	Open in IMG/M
3300018020	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_100	Environmental	Open in IMG/M
3300018024	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_100	Environmental	Open in IMG/M
3300020814	Granular sludge microbial community from anaerobic digester, University of Toronto, Ontario, Canada - UASBVu03_granules megahit	Engineered	Open in IMG/M
3300021603	Granular sludge microbial community from anaerobic digester, University of Toronto, Ontario, Canada - UASBVu03_granules spades	Engineered	Open in IMG/M
3300021843	Anaerobic digester digestate microbial community, University of Toronto, Ontario, Canada - DG078 spades	Engineered	Open in IMG/M
3300022556	Kivu_combined assembly	Environmental	Open in IMG/M
3300023207	Combined Assembly of Gp0238866, Gp0238878, Gp0238879	Engineered	Open in IMG/M
3300025136	Anoxic lake water microbial communities from Lake Kivu, Rwanda to study Microbial Dark Matter (Phase II) - Lake Kivu water 275m metaG (SPAdes)	Environmental	Open in IMG/M
3300026311	Anaerobic biogas reactor microbial communites from Washington, USA - Biogas_R2 time_0 SIP DNA (SPAdes)	Engineered	Open in IMG/M
3300027051	Enrichment culture microbial communities from Arthur Kill intertidal strait, New Jersey, USA, that are MTBE-degrading - MTBE-AKM (Arthur Kill Methanogenic) MetaG (SPAdes)	Engineered	Open in IMG/M
3300027592	Enrichment culture microbial communities from Arthur Kill intertidal strait, New Jersey, USA, that are MTBE-degrading - MTBE-AKS1 (Arthur Kill Sulfidogenic replicate 1) MetaG (SPAdes)	Engineered	Open in IMG/M
3300027856 (restricted)	Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_23	Environmental	Open in IMG/M
3300027868 (restricted)	Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_22	Environmental	Open in IMG/M
3300027888	Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-30_32 (SPAdes)	Environmental	Open in IMG/M
3300027896	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies -HBP12 HB (SPAdes)	Environmental	Open in IMG/M
3300027901	Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-1-36_30 (SPAdes)	Environmental	Open in IMG/M
3300027902	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - CRP12 CR (SPAdes)	Environmental	Open in IMG/M
3300027917	Marine sediment microbial communities from White Oak River estuary, North Carolina - WOR-2-8_12 (SPAdes)	Environmental	Open in IMG/M
3300028299	Saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2010_1_5_45m	Environmental	Open in IMG/M
3300029288	Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 137-91	Engineered	Open in IMG/M
3300029799	Metagenomes from anaerobic digester of solid waste, Toronto, Canda. Combined Assembly of Gp0238878, Gp0238879, Gp0242100, Gp0242119	Engineered	Open in IMG/M
3300030019	II_Fen_E2 coassembly	Environmental	Open in IMG/M
3300031277	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1603-30	Environmental	Open in IMG/M
3300031341	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1602-20	Environmental	Open in IMG/M
3300031371	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1603-10	Environmental	Open in IMG/M
3300031551	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1601-110	Environmental	Open in IMG/M
3300031699	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1602-20	Environmental	Open in IMG/M
3300031862	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_40	Environmental	Open in IMG/M
3300031999	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_20	Environmental	Open in IMG/M
3300032177	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_0	Environmental	Open in IMG/M
3300032276	Coastal sediment microbial communities from Maine, United States - Phippsburg worm burrow 1	Environmental	Open in IMG/M
3300033408	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day20_noCT	Environmental	Open in IMG/M
3300033487	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_May_M1_C1_D6_A	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
PBDC3_07770610	2124908004	Poplar Biomass Bioreactor	QLAKPFPKNEKAEDPLIMRTDDMKEFSEVIRSKIIPTTFVFQCTLCGLEISDYDRHFGLIKMNQHVMSEHANQVKSLDMEDLYSRKPTVVLESF
Draft_00223572	3300000032	Hydrocarbon Resource Environments	MKDFNEVVKQKIIPTTFVFRCTICGFEVTDCDRHFGIIKMNDHMIANHSGEVNFLAKEDLYSRKANVVLDSFN*
JGIcombinedJ13530_1033685153	3300001213	Wetland	MKEFKDVIKFKTIPTTFVFHCSLCGFEITEYDRHFGLIKMNEHVIAKHSKEVESLDKEDLYSRKPTIVLESF*
JGIcombinedJ13530_1036343111	3300001213	Wetland	MKEFKDVIKFKTIPTTFVFHCSLCGFEITEYDRHFGLIKMNEHVIAKHSREVESLDKEDLYSRKPTIVLESF*
JGIcombinedJ13530_1057328581	3300001213	Wetland	MKDFKEAVKIKIIPTTFVYRCTLCGFEMTDYDRHFGLIKMNEHIISNHSKEVDSLGREDLYSRKLEIPLDSFD*
JGIcombinedJ13530_1068248542	3300001213	Wetland	MKEFKDVIKFKTIPTTFVFHCSLCGFEITEYDRHFGLIKMNDHVIQKHSNEVSSLDKEELYSRKPSITLESF*
SMTZ23_1000344916	3300002053	Marine Sediment	MSIKEFKDVVKLRIIPATFVFRCSLCGFEISNYDRHLGLIKMNEHIISSHSTEVNSLGKEDLYSRKPEIVLGSF*
SCADCLC_102159241	3300002219	Hydrocarbon Resource Environments	MKDFNEVVKQKIIPTTFVFRCTICGFEVTDCDRHFGIIKMNDHMIANHSGEVNFLAKEDLYSRKPNVVLDSFN*
MLSBCLC_104983771	3300002220	Hydrocarbon Resource Environments	MKDFNEVVKQKIIPTTFVFRCTICGLMKMNDHMIANHSGEVNFLAKEDLYSRKANVVLDSFN*
MLSBCLC_105447194	3300002220	Hydrocarbon Resource Environments	MKEFNEVIKLKIIPTTFVLRCTLCGFETTDYDQHFGLIKMNEHMISKHHTEVNFLGKEDLYSRKTNIILDNF*
Iso3TCLC_100069934	3300002821	Hydrocarbon Resource Environments	MRSSGDMKDFNEVVKQKIIPTTFVFRCTICGFEVTDCDRHFGIIKMNDHMIANHSGEVNFLAKEDLYSRKANVVLDSFN*
JGI20214J51088_101597933	3300003432	Wetland	MKDFKDVIKSKTIPTTFVFHCTLCGFEIAEYDRHFGLIKMNEHVISKHSNDVKSLDMEDLYSRKPAITLESF*
JGI20214J51088_107654511	3300003432	Wetland	MKEFKDVIKFKTIPTTFVFHCSLXGFEITEYDRHFGLIKMNEHVISKHSKEVESLDKEDLYSRKPTIVLESF*
JGI20214J51650_103329422	3300003541	Wetland	IPTTFVFHCTLCGFEIAEYDRHFGLIKMNEHVISKHSNDVKSLDMEDLYSRKPAITLESF
JGI20214J51650_111442141	3300003541	Wetland	MKDFKDVIKLKVVPATFVFRCSLCGFEVSNYDRHFGLITMNDHIIAKHSQEVQSLDKEDLYSRKPEIMLESD*
Ga0031655_100623873	3300003852	Freshwater Lake Sediment	MKEFKDVVKLKIVPATFVYRCAICGFTIDNYDRHFGLIEMNKHMISNHSTEVNSLDEEDLYSRKPDVALERF*
Ga0065201_16099591	3300004459	Sediment	MDMKEFKEVVKLKIIPTTFVFRCTLCGFEMTNYDRHFGLIKMNEHIISNHSTEVNSLGKEDLYSRKPEIVLDRF*
Ga0068711_100056812	3300005144	Enrichment Culture	MKDFKEVVKLKIIPTTFVFRCSLCGAEITNYDRHFGLIKMNEHIVANHSKEVNSLGREDLYSRKMDIILEKF*
Ga0068712_10158545	3300005252	Enrichment Culture	MDLKDFREVVKLKIIPTTFVFRCTLCGFEMTNYDRHLGLIKMNEHMISNHSTEVNSLGREDLYSRKPQIALDKF*
Ga0074230_19129791	3300005504	Poplar Biomass Bioreactor	QLAKPFPKNEKAEDPLIMRTDDMKEFSEVIRSKIIPTTFVFQCTLCGLEISDYDRHFGLIKMNQHVMSEHANQVKSLDMEDLYSRKPTVVLESF*
Ga0074469_107263042	3300005832	Sediment (Intertidal)	MELKDFKEVVKLKMIPTTFVFRCTLCGLEITNYDRHFGLIKMNQHIISNHSKEVNSLGKEDLYSRKPEIVLDKF*
Ga0079037_1011088301	3300006224	Freshwater Wetlands	MQDFTDVIKFKIVPTTFVFHCSLCDFEVSEYDRHFGLIKMNQHVMSEHSADVKSLDMEDLYSRKPTIVLDSF*
Ga0111545_10615662	3300007918	Sediment	LKDFREVIKLKIVPTTFEFRCTLCGFKIVNYDRHFGLIQMNEHVLEKHAEEVQSLDKEELYSRKPDITLDSD*
Ga0115362_1020559872	3300008416	Sediment	MDIKEFNEVVKLKIIPTTFVFRCTLCDFEMTNYDRHLGLIKMNEHLVSDHSTEVNFLAREDLYSRKMEMKLDSF*
Ga0105106_100489302	3300009078	Freshwater Sediment	MVIKEFEEVVKMKIIPATFIFRCTLCGFENTNYDRHFGLIKMNEHIVSCHSAEINPLGTEDLYSRKPEVALDSF*
Ga0105106_103148602	3300009078	Freshwater Sediment	MQEFKDVVKLKIIPTTFVLHCSICGFEVTSYDRLLGLIKMNEHIISDHSKEVSFLGKEDLYSRKSEIVLDRF*
Ga0105099_102758942	3300009082	Freshwater Sediment	MVIKEFEEVVKMKIIPTTFIFRCTLCGFENTNYDRHFGLIKMNEHIVSCHSAEINPLGTEDLYSRKPEVALDSF*
Ga0105107_112677811	3300009087	Freshwater Sediment	DEMVIKEFEEVVKMKIIPTTFIFRCTLCGFENTNYDRHFGLIKMNEHIVSCHSAEINPLGTEDLYSRKPEVALDSF*
Ga0118724_100549617	3300009127	Marine	MDIKEFNEVVKCKTIPTTFVFRCTLCGFEMTNYDRHLGLIKMNEHIVSNHSTEVNSLGREDLYSRKMEIELDSF*
Ga0118724_10463492	3300009127	Marine	MDIKEFKEVVKLKIIPTTFVFRCTLCGFEMTEYDRHLGLIKMNEHIVSNHSKEVNSLGKEDLYSRKMEIVLDKF*
Ga0118724_10514501	3300009127	Marine	MDIKEFNEVVKLKIIPTTFVFRCTLCGLEMTNYDRHLGLIKMNEHIVSNHSTEVNSLGREVM*
Ga0118724_11165242	3300009127	Marine	MKVFEEVVKMKIIPTTFAFRCTLCGFEITDYDRHFGLIKMNEHIISKHATEVDSLGKEALYSRKQEIVLDKF*
Ga0118724_12116072	3300009127	Marine	MDIKDFKEVVKLKIIPTTFVFRCTLCGFEMTDYDRHLGLIKMNEHMISNHSTEVNSLGREALYSRKPEIVLDRF*
Ga0105102_102531711	3300009165	Freshwater Sediment	IGVSGTVRGGIYKVKEFQEVVKMKIIPTTFVFCCTLCGSKIINYDRHFGLIAMNKHILDKHSSEITALNTEDLYSRKPDIMLERF*
Ga0113563_117097933	3300009167	Freshwater Wetlands	FRCTECGLEITEYDYHFGLIKMNEHVISQHCDEVQSLDKEDLYSRKPSVILDGF*
Ga0113563_120316951	3300009167	Freshwater Wetlands	MKDFSEVVKAKTIPTTFVFRCQLCGFEVTDFDRHFGLIKMNQHIKAVHGGEVRSLDMEDLYSRKLTVVLEEF*
Ga0113563_122101732	3300009167	Freshwater Wetlands	MKEFKDAVKLKIIPTTFIFKCSVCGEEITDYDRHFGLIKVNDHMVTKHINEVNSLSKEDLYSRRADISFERFE*
Ga0105097_102617602	3300009169	Freshwater Sediment	MVIKEFEEVVKMKIIPTTFVFRCTLCGFENTNYDRHFGLIKMNEHIVSCHSAEINPLGTEDLYSRKPEVALDSF*
Ga0115028_108994891	3300009179	Wetland	MKDFKDVIKSKTIPTTFVFHCTLCGFEIAEYDRHFGLIKMNEHVISKHSNDVKSLDMEDLYSRKPAITLDSF*
Ga0117912_10385205	3300009329	Marine	DIKEFNEVVKCKTIPTTFVFRCTLCGFEMTNYDRHLGLIKMNEHIVSNHSTEVNSLGREDLYSRKMEIELDSF*
Ga0118657_105256811	3300009506	Mangrove Sediment	KIIPTTFVFRCEICGLEITNYDRHFGLIKMNQHVVAEHPKQVNSLGKEDLYSRKMEISLEKF*
Ga0118657_108265071	3300009506	Mangrove Sediment	MKEFNEVVKFKIIPTIFMYRCTLCGAEITNSDRHFGLIQMNEHIVSKHSKEVNSLGREDLYSRKTEIVLEKF*
Ga0118657_125368882	3300009506	Mangrove Sediment	VKEFKEVVKLKIIPTTFVFRCDLCGFEVTNYDRHFGMIKMNEHLVSAHPKEVNTLGREDLYSRKTDIALKKF*
Ga0116234_12474182	3300009542	Anaerobic Biogas Reactor	MKEFNEVIKFKTIPITFMFHCTLCNYEITDYDRHFGLIRMNEHVIAAHPTEVHSLDKEDLYSRKPAIVLENF*
Ga0123335_11954262	3300009680	Anaerobic Biogas Reactor	PITFMFHCTLCNYEITDYDRHFGLIRMNEHVIAAHPTEVHSLDKEDLYSRKPAIVLENF*
Ga0116235_10853252	3300010310	Anaerobic Biogas Reactor	FAFALNDSRGKMKDRKMKDFKEVIKSKIIPTTFVFHCSLCGFEISDYDRHFGLIKMNRHVMAEHEKEVKSLDMEDLYSRKPTITLESF*
Ga0136653_100645522	3300010319	Anoxic Lake Water	MQEFTEVIKLKVIPTTFVFRCTLCGFETAECDRHLGLIKMNEHVLAKHPREVKCLDNEDLYSRKPNIVLGE*
Ga0136851_105574292	3300010413	Mangrove Sediment	MKDFKEVVRQKIIPTTFVFRCTLCGLEITNYDRHFGLIKMNEHIISNHSTEVKSLDKEDLYSRKPEIILDKF*
Ga0136851_117025171	3300010413	Mangrove Sediment	MGTAEIKEFQDVVQLKIIPTTFVFRCTLCGFEITNFDRHLGLIKMNEHIASKHSNEANPLGKEDLYSRKPHVVLNHF*
Ga0153915_100606493	3300012931	Freshwater Wetlands	MRDKMKEFKDVIKEKTIPITFMFRCTLCGHEISEYDYHFGLIKMNEHVIANHSSEVKSLDMEDLYSRKPAVVLENY*
Ga0153915_101654244	3300012931	Freshwater Wetlands	MKEFRDVVKTKTIPTTFIFRCTLCGFELSEYDRHFGLIKMNQHVMSEHPGEVQSLDMEDLYSR
Ga0153915_107314022	3300012931	Freshwater Wetlands	MKEFKEVVKLKIIPTTFVLHCTLCGFEITDYDRHLGLIKMNDHIISNHSKEVNSLGKEDLYSRKQEIVLEKF*
Ga0153915_123150291	3300012931	Freshwater Wetlands	MGMKEFEEVIKLKIIPTTFVFRCTLCGFENTNYDRHFGLIKMNEHIVSNHSAEINPLGTEDLYSRKPEIMLDSF*
Ga0153916_106241882	3300012964	Freshwater Wetlands	MKDFKEVIKAKTIPTTFVFHCTLCGFEIADYDKHFGLIKMNEHVISKHAAEVQSLDMEDLYSRKPMITLDTF*
Ga0153916_121245372	3300012964	Freshwater Wetlands	MKDFQEVIKMKIVPATFVFRCTLCGFELTDYDRHLGLIEMNNHIISKHSTEVNSLGREDLYSRKLEIVLDGF*
Ga0153916_132725811	3300012964	Freshwater Wetlands	MKEFKEVVKLKIIPTTFVLHCTLCGFEITDYDRHLGLIKMNDHIISNHSKEVNSLGREDLYSRKPEIVLDKF*
Ga0163200_11833851	3300013088	Freshwater	MRSSDDMDIKDFKEVVKLKIIPTTFVFRCTLCGFEMTDYDRHLGLIKMNEHMVSNHSTEVNSLGREDLYSRKQEIVLDRF*
(restricted) Ga0172375_1000010086	3300013137	Freshwater	MKEFKDAVRLKIVPATFVFRCTVCGAEITNYDRHFGLIEMNKHLITKHSTEVKSLDEEELYSRKPEIALERF*
Ga0182010_107377321	3300014490	Fen	MKDFKDVVKLKTVPTTFTFHCSLCKFEITEFDWHFGLIKMNDHIIEKHGKEVQSLDKEDL
Ga0182011_105761141	3300014496	Fen	MKSFDEVIKLKTIPTTFIFRCSLCGFEAKNYDRHFGLIEMNEHLIQKHPIDVRSLDKEDL
Ga0182019_102132892	3300014498	Fen	MKSFDEVIKLKTIPTTFIFRCSLCGFEAKNYDRHFGLIEMNEHLIQKHPIDVRSLDKEDLYSRKPSVELEEF*
Ga0182019_102200472	3300014498	Fen	MKSFDEVIKLKTIPTTFIFRCSLCGFEAKNYDRHFGLIEMNEHLIQKHPTEVRSLDKEDLYSRKPSIELEEF*
Ga0182021_108379852	3300014502	Fen	MKDFKDIVKLKTVPTTFTFHCSICKFEITEFDWHFGLIKMNDHIIEKHGKEVQSLDKEDLYSRRPVIHLEEF*
Ga0182021_111955771	3300014502	Fen	MKEFKDVIKFKTVPTTFVFHCTICGFEITEYDRHFGLIKMNDHVISKHSNEVQSLDKEDLYSRKPTIVLDNF*
Ga0182021_116870752	3300014502	Fen	MKDFKDVIKLKTIPTTFHFHCSLCNFEITEYDWHFGLIKMNDHVIEKHAGEVQSLDKEDLYSRRPVITLETY*
Ga0182027_109071952	3300014839	Fen	MKSFNEVIQLKTIPTTFIFRCSLCGFEAKNYDRHFGLIEMNEHLIQKHPTEVRSLDKEDLYSRKPSIELEEF*
Ga0164321_101208252	3300014903	Marine Sediment	MDIKEFNEVVKLKIIPTTFVFRCTLCGFEMTNYDRHFGLIKMNEHIVSDHSTEVNFLGREDLYPRKMEIELDSF*
Ga0164321_104609292	3300014903	Marine Sediment	MEIKEFNEVVKLKVIPTTFVFRCTLCDFEMTNYDRHLGLIKMNEHIVSDHSTEVNFLGREALYSRKMEIELDSF*
Ga0172382_100699943	3300015214	Landfill Leachate	MKEFNEVIKFKTIPITFMFHCTLCNYEITDYDRHFGLIRMNEHVIAAHPTEVHSLDKEDLYSRKPAIVLEDF*
Ga0172382_101862422	3300015214	Landfill Leachate	MGRGEAMKEFREVIKFKTIPTEFVFRCSLCDYETKNYDRHFGLIKMNEHILSSHSTEVRSLDKEDLYSRRPAIVLDSF*
Ga0187870_12000201	3300017998	Peatland	VTIRTRNIDNMKDFKEVVKMKMIPTTFAFRCILCGFEIIDSDRHFGIIKMNEHMISNHSNEVNSLDKENLYSRKTEIVLDKF
Ga0187878_12741232	3300018005	Peatland	MKDFKEVVKMKMIPTTFAFRCILCGFEIIDSDRHFGIIKMNEHMISNHSNEVNSLDKENLYSRKTEIVLDKF
Ga0187861_103866011	3300018020	Peatland	MKDFKDVIKLKTIPTTFHFHCSLCQFEITEYDWHFGLIKMNDHVIEKHAGEVQSLDKEDLYSRRPVITLESF
Ga0187881_101364581	3300018024	Peatland	MKDFKEVVKMKMIPTTFAFRCILCGFEIIDSDRHFGIIKMNEHMISNHSNEVNSLDKENLYSRKTEIVLDK
Ga0187881_104815021	3300018024	Peatland	MKDFKDVVKLKTIPTTFTFHCSLCKFEITEFDWHFGLIKMNDHIIEKHGKEVQSLDKEDLYSRRP
Ga0214088_16879552	3300020814	Granular Sludge	MKDFKDVIKLKTVPTTFHFRCSICNFEITEYDWHFGLIKMNDHVIEKHPDDVQSLDKEDLYSRRPVITLDSF
Ga0226659_105189551	3300021603	Granular Sludge	LCGFEISDYDRHFGLIKMNEHVMKNHSKEVKSLDMEDLYSRKPTVVLDNF
Ga0226657_101716642	3300021843	Anaerobic Digester Digestate	MKEFQEVIKSKIIPTTFVFQCTICGLEISDYDRHFGLIKMNQHVIAEHSDQVKSLDMEDLYSRKPTIVLE
Ga0212121_100029055	3300022556	Anoxic Lake Water	MQEFTEVIKLKVIPTTFVFRCTLCGFETAECDRHLGLIKMNEHVLAKHPREVKCLDNEDLYSRKPNIVLGE
Ga0255811_104984131	3300023207	Anaerobic Digester Digestate	MKEFQEVIKSKIIPTTFVFQCTICGLEISDYDRHFGLIKMNQHVIAEHSDQVKSLDMEDLYSRKPTIVLENF
Ga0209610_12704672	3300025136	Anoxic Lake Water	IVRQRERREMQEFTEVIKLKVIPTTFVFRCTLCGFETAECDRHLGLIKMNEHVLAKHPREVKCLDNEDLYSRKPNIVLGE
Ga0209723_11248072	3300026311	Anaerobic Biogas Reactor	PITFMFHCTLCNYEITDYDRHFGLIRMNEHVIAAHPTEVHSLDKEDLYSRKPAIVLENF
Ga0209269_100061620	3300027051	Enrichment Culture	MKDFKEVVKLKIIPTTFVFRCSLCGAEITNYDRHFGLIKMNEHIVANHSKEVNSLGREDLYSRKMDIILEKF
Ga0209270_11708252	3300027592	Enrichment Culture	KIIPTTFVFRCTLCGFEMTNYDRHLGLIKMNEHMISNHSTEVNSLGREDLYSRKPQIALDKF
(restricted) Ga0255054_101747832	3300027856	Seawater	DTKDFKDVVILKIIPTTFVFRCTLCGFEMTNYDRHLGLNQMNEHMVSNHSTEVNSLGKEDLYSRKSEIVLDRF
(restricted) Ga0255053_103808201	3300027868	Seawater	MDMKDFKDVVKLKIIPATFVFRCTLCGFEMTNYDRHLGLNQMNEHMVSNHSTEVNSLGKEDLYSRKSEIVLDRF
Ga0209635_100292202	3300027888	Marine Sediment	MSIKEFKDVVKLRIIPATFVFRCSLCGFEISNYDRHLGLIKMNEHIISSHSTEVNSLGKEDLYSRKPEIVLGSF
Ga0209777_1000009960	3300027896	Freshwater Lake Sediment	MKEFKDVVKLKIVPATFVYRCAICGFTIDNYDRHFGLIEMNKHMISNHSTEVNSLDEEDLYSRKPDVALERF
Ga0209777_101755752	3300027896	Freshwater Lake Sediment	MDAKDFKDVVKLKIVPTTFAFRCTLCGFETTASDRHLGLIKMNEHMVAKHSTEVNPLGREDLYSRKPEITLEKF
Ga0209777_101883642	3300027896	Freshwater Lake Sediment	MKEFKDVVKLKIVPATFVYRCAICGLTIDNYDRHFGLIEMNKHMISNHSTEVNTLDEEDLYSRKPDVALERF
Ga0209777_106384181	3300027896	Freshwater Lake Sediment	MKEFREVVKLKIVPATFVYRCTICGFNVENFDRHFGLIEMNKHMISNHSTEVNSLDEEDLYSRKPDIALERF
Ga0209777_108724762	3300027896	Freshwater Lake Sediment	MKEFREVIKAKTIPTTFVFHCTLCGFEIADYDKHFGLIKMNEHVISKHATEVQSLDMEDLYSRKPTITLDTF
Ga0209427_106890342	3300027901	Marine Sediment	MDMKEFKEVVKLKIIPATFVFRCTLCGFEVTNYDRHLGLIEMNRHISSNHYTEVNSLGREDLYSRKPEIVLERF
Ga0209048_105196892	3300027902	Freshwater Lake Sediment	MKELEEVVKLKIIPATFVFRCELCGCEITDYDRHFGLIKMNEHIIAKHAGEVNYLGKEDLYSRKPNIILEKF
Ga0209536_1013958842	3300027917	Marine Sediment	TTFAFRCTLCGFEITSYDRHLGLIDMNKHITSNHSNEVNSLSKEELYSRKTEIKLDTF
Ga0268276_12299741	3300028299	Saline Water	MKEFKDVVKYKMIPTTFVFRCTLCGTEISNPDRHFGLIKMNEHITSSHSTEVNVLGREDLYSRKPNIV
Ga0265297_100526537	3300029288	Landfill Leachate	MRDSDDMRDFKEVVKMKIVPAVFVFRCTLCDCEISDYDRHFGLIKMNEHMVSNHSKEVNPLGKEDLYSRKPEIMLDKF
Ga0311022_126238971	3300029799	Anaerobic Digester Digestate	MKDFKEVIKLKAIPTTFKFRCTLCNLEIVEYDWHFGLIKMNQHVVEAHPNEVQSLDMEELYSR
Ga0311348_114394621	3300030019	Fen	MQDFKDVVKLKTIPTTFTFHCSLCKFEITEFDWHFGLIKMNDHIMEKHAGEVQHLDKEDLYSRRPVIHLEEF
Ga0307425_11036912	3300031277	Salt Marsh	MKDFKEVVKMKTIPTTFVFRCDLCGTEITDYDRHFGLIKMNKHVVEKHPKDVNSLGKEDLYSRKMEITLEKF
Ga0307418_12017782	3300031341	Salt Marsh	TTFVFRCSLCGEEITDYDRHFGLIKMNKHMVEKHPKDVNSLGKEDLYSRKMEITLEKF
Ga0307423_10228513	3300031371	Salt Marsh	MKDFKEVVKLKIIPTTFVFRCEICGLEMSNYDRHFGLIKMNEHVVGKHPKEVNSLGKEDLYSRKMEISLEKF
Ga0315548_11344611	3300031551	Salt Marsh Sediment	MDIKEFKEVVKLNIIPATFYFRCTLCGFETTNYDRHLGLIDMNKHIISNHSREVNSLSREDLYSRKTEIKLDSF
Ga0315535_10695741	3300031699	Salt Marsh Sediment	MKDFKEVVKMKVIPTTFVFRCSLCGEEITDYDRHFGLIKMNKHMVEKHPKDVNSLGKEDLYSRKMEITLEKF
Ga0315280_101395911	3300031862	Sediment	MDMKDFKEVVKLKIIPTTFVFRCTLCGFEMNNYDRHSGMIKMNEHMISKHSNEVNSLGREDLYSRKSEIVLDRF
Ga0315274_119659392	3300031999	Sediment	MKEFEEVVKMKIIPTTFVFRCTLCGLEITHCDRHFGLINMNEHMISSHSTEVNSLDKEDLYSRKPQIVLDSY
Ga0315276_123998101	3300032177	Sediment	FKEVVKLKIIPTTFVFRCTLCGFEITNYDRHFGLIKMNEHMISNHSTEVNSLDKEDLYSRKPEIVLDRF
Ga0316188_105817522	3300032276	Worm Burrow	MEMKEFKDVVKLKIIPTTFVFRCTLCGFEDTTYDRHFGLIKMSEHIIEKHSGEVNSLGKEDLYSRKLNITLESF
Ga0316605_108871102	3300033408	Soil	MKDFKDVIKSKTIPTTFVFHCTLCGFEIAEYDRHFGLIKMNEHVISKHSNDVKSLDMEDLYSRKPAITLDSF
Ga0316605_110697221	3300033408	Soil	MKEFKDVIKFKTIPTTFVFHCSLCGFEITEYDRHFGLIKMNEHVIAKHSKEVESLDKEDLYSRKPTIVLESF
Ga0316630_103498292	3300033487	Soil	MKDFDEIVKLKVVPTTFVFKCTLCGFEVTDFDRHLGLIKMNNHVLANHSKEVNSLGMEDLYSRKQEIALGKF

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters