| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300009105 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0118094 | Gp0127950 | Ga0117905 |
| Sample Name | Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 900m, 2.7-0.2um, replicate a |
| Sequencing Status | Permanent Draft |
| Sequencing Center | Georgia Genomics Facility |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 546222175 |
| Sequencing Scaffolds | 21 |
| Novel Protein Genes | 22 |
| Associated Families | 15 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia | 2 |
| All Organisms → cellular organisms → Archaea | 4 |
| Not Available | 4 |
| All Organisms → cellular organisms → Bacteria | 3 |
| All Organisms → cellular organisms → Archaea → Euryarchaeota → Hadesarchaea → unclassified Hadesarchaea → Hadesarchaea archaeon B3_Hades | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfotignum → Desulfotignum balticum | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Syntrophus → Syntrophus gentianae | 1 |
| All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | marine biome → coastal water body → coastal sea water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Cariaco Basin, Venezuela | |||||||
| Coordinates | Lat. (o) | 10.5 | Long. (o) | -64.66 | Alt. (m) | N/A | Depth (m) | 143 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F013484 | Metagenome / Metatranscriptome | 271 | Y |
| F016493 | Metagenome / Metatranscriptome | 246 | Y |
| F022812 | Metagenome / Metatranscriptome | 212 | Y |
| F059607 | Metagenome | 133 | Y |
| F060609 | Metagenome / Metatranscriptome | 132 | Y |
| F060972 | Metagenome | 132 | Y |
| F075650 | Metagenome | 118 | Y |
| F076658 | Metagenome | 118 | Y |
| F084254 | Metagenome / Metatranscriptome | 112 | Y |
| F087249 | Metagenome / Metatranscriptome | 110 | Y |
| F088317 | Metagenome / Metatranscriptome | 109 | Y |
| F091390 | Metagenome | 107 | Y |
| F101182 | Metagenome | 102 | Y |
| F101186 | Metagenome | 102 | N |
| F103060 | Metagenome | 101 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0117905_1000097 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia | 153885 | Open in IMG/M |
| Ga0117905_1000100 | All Organisms → cellular organisms → Archaea | 152683 | Open in IMG/M |
| Ga0117905_1000147 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia | 128550 | Open in IMG/M |
| Ga0117905_1000301 | Not Available | 91640 | Open in IMG/M |
| Ga0117905_1000354 | All Organisms → cellular organisms → Archaea | 85760 | Open in IMG/M |
| Ga0117905_1000424 | Not Available | 78873 | Open in IMG/M |
| Ga0117905_1000496 | All Organisms → cellular organisms → Bacteria | 70221 | Open in IMG/M |
| Ga0117905_1004944 | All Organisms → cellular organisms → Archaea | 15406 | Open in IMG/M |
| Ga0117905_1006720 | All Organisms → cellular organisms → Archaea → Euryarchaeota → Hadesarchaea → unclassified Hadesarchaea → Hadesarchaea archaeon B3_Hades | 12042 | Open in IMG/M |
| Ga0117905_1010663 | All Organisms → cellular organisms → Bacteria | 8158 | Open in IMG/M |
| Ga0117905_1012984 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria | 6885 | Open in IMG/M |
| Ga0117905_1016432 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfotignum → Desulfotignum balticum | 5587 | Open in IMG/M |
| Ga0117905_1020882 | All Organisms → cellular organisms → Archaea | 4512 | Open in IMG/M |
| Ga0117905_1021229 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae → Syntrophus → Syntrophus gentianae | 4445 | Open in IMG/M |
| Ga0117905_1022529 | All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon | 4211 | Open in IMG/M |
| Ga0117905_1024825 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 3860 | Open in IMG/M |
| Ga0117905_1032313 | All Organisms → cellular organisms → Bacteria | 3053 | Open in IMG/M |
| Ga0117905_1036762 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales | 2724 | Open in IMG/M |
| Ga0117905_1051021 | Not Available | 2043 | Open in IMG/M |
| Ga0117905_1051407 | Not Available | 2029 | Open in IMG/M |
| Ga0117905_1165077 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium | 735 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0117905_1000097 | Ga0117905_100009792 | F059607 | VRVISNLKSFVIARGNEEKVELKVASELGGKELEDEGFAFTLWLLENASIPFLRGLAEALDEAEIRKKAGLGY* |
| Ga0117905_1000100 | Ga0117905_100010049 | F091390 | MSTKSTTIRVNKSTKEKLANLDLVRKDTFDEILSKLIEFYEKNKEAGRK* |
| Ga0117905_1000147 | Ga0117905_100014758 | F016493 | MGWFGNKVAKFRQVPDPYFSLHVTAKFLAGVGIGVLLATWLPVWTGWIFIGVALLIAIPSARIVLTR* |
| Ga0117905_1000301 | Ga0117905_100030195 | F091390 | MAKKSTTLRVDQSTKDKLENLDFVRKDTFDEILLKLIAYYEKREGGKK* |
| Ga0117905_1000354 | Ga0117905_100035491 | F091390 | MSTKSTTTIRVEKCTKEKLENLDFVRKHTFDEILSKLIEFYEKNADGRK* |
| Ga0117905_1000424 | Ga0117905_10004247 | F103060 | MAILAPADLPSVLKVRSEPMKKYVLSKLAFPVTEVEITEDQWETIFRVAGDFISGYFPREQKLALFWTTPLQSTYPLPADAYWVQEVSWDPVTTRIDDVFGAESFLFNIGNISGIQNILTDYHLLQSYRKFSQKVLGTEGHWEVIGEVEGNVEGDSLDAKDQLIRLYPTPKGAFPVVILYIPVVNHFRSPQARAICYEMMEAEVKHAVGMARRKVAGMPTPDGGSINYDGSDLVQEANAVKETIIEKALNLGEPYPVLIWNILLPILMFGGSLIKDII* |
| Ga0117905_1000496 | Ga0117905_100049643 | F088317 | MPGPEDNVKYPPPPNIPQEELNKTAPKTRTDCYKGIEAPPIPPLEKSQLLRVIESGFKETEDASRYVMEPPRELPYRILPLLTKFVSTNTRHLKEIGAFRTLMPELFGDAGYKAVDDAYASFAYGEFKTAQARGQLKNAPNCTAREIGIFIATVYDIQNFPIVIAEATDDKVRIQLYKGLPVYCPYDVRRGDYRLCAATAAYERELTKLCNPKYRAYLSRTKAIGDDCCELTIELDPDYKG* |
| Ga0117905_1004944 | Ga0117905_10049443 | F091390 | MSTKSTTIRINQSTKEKIENLDFVRKDTFDQILLKLIEFYEKNKKKM* |
| Ga0117905_1006720 | Ga0117905_100672016 | F076658 | MWYRYYLTVPRGTTKIIRARKEIELPEGVITKVRVRFPPGPRGEVFTAVFQGTHKMWPRGAGNWVWGDDEAIEMSEHVRNIPGWHYWLEGYAPDTSYNHTIWWDFNVLEKEYAETWGPIQELVRLLKDLIGL* |
| Ga0117905_1006720 | Ga0117905_10067206 | F075650 | MRFREYRVTSRQITDPMFGIPRTVESLVFLVSHVDGVEVDKTFSVVSEKLAQEFESYLEDGTYKNYEWCLVKDGVGFVPPRIAKRSRV* |
| Ga0117905_1010663 | Ga0117905_10106634 | F060972 | MAYHSNLHTYIVGINYESPDEDKGHFDIQRKVTMKELAIEIADYLQNGKSSYPAFPPEANPEVWYVWDMDDPDDGDVYHQLNHEINKIITNKRKAA* |
| Ga0117905_1012984 | Ga0117905_10129843 | F060609 | VSELKKSEAVSVSRWEFCRKAIKRSSIAAAAGVAGYLAYRKPEVRSFFGAKDAYAANTGAGSLSLKGDSN* |
| Ga0117905_1016432 | Ga0117905_10164326 | F101182 | MDTYEEDLQYEKKMDRISEQIEELMLDAMIAALIKIKDRYLFYSSITTRPQNDPYPF* |
| Ga0117905_1020882 | Ga0117905_10208824 | F091390 | MSTKSTTIRINQDTKEKIENLDFVRKDTFDQILNKLMKFYEKNKKRCKK* |
| Ga0117905_1021229 | Ga0117905_10212295 | F022812 | LLQAISKLTLRVQTVEIAYLTLRQDLSAKSAAMTAQKNFH* |
| Ga0117905_1022529 | Ga0117905_10225294 | F091390 | MSTKSTTIRINQDTKEKIENLDFVRKDTFDQILNKLIDFYEKNKKRCKK* |
| Ga0117905_1024825 | Ga0117905_10248251 | F060609 | VNELQKSEGVSVSRREFCMKAVERTTIAAAAAAFAYEKPAIRSFLGVKEAYAAFTTARAGKFSLKGDSN* |
| Ga0117905_1032313 | Ga0117905_10323134 | F101186 | MLSENQQSLFADFHKSVEAEGILDAKTSHLIKVAAAMAFGCYP* |
| Ga0117905_1036762 | Ga0117905_10367622 | F087249 | MDAYIAAASENVDPSNIGTIDELSAKFLDTLSPKEMGFLMYDNPQPLSLQEVDREIRNKYKAKYGTKNLKRGQFFRLKSGTITFFTHEHNLKFKVDN* |
| Ga0117905_1051021 | Ga0117905_10510211 | F084254 | IPVYISEPMVIEILAEVIRQSKRHPRADQVVSALAIRGLPIAENDVMTVFDHYDIEKKIPDSH* |
| Ga0117905_1051407 | Ga0117905_10514071 | F013484 | ANGDEDAALRLVMELLELADVAPQAEIARAVGYSQARSLRTYKQRLEEEGLGGLFDRPITGRPVVTSHLAVERAVVQAVLEAVITEHVLPDDEALAQAVNGFLAEAQSPWAGQVTASMVETIRLRLEIQRPILAQQLQAANDSQPSAQEQVRLGRTKAGGAFILAVLLVETGWLKLAELLPMAPGYAVTAVQWLLTAIFAVIYDVRRAFHLDDVRDIGFALITGRARPLSHSTFQHLLHAIPAEAARRFYEATARWIVRGLGAGVRRISLDGHNLPRYTKVVDVIKGKIGNTGRILKAEEMVLAFDLDAWLWLALRVYQGTKKLSQALLEMVAELRRHREGIEGLWRIFFDKGGYKGQNFQALSALPDVHFYTPAVRYPTNVEQWEQLEEGDFDPDPFVFDKHADLPAQEQLTYRLADMTMTVNIREKNRVVGTVELRAIVIHDPKGQTPAEQWPLVVLTDDYQIDARELANEFGDHWGQEFGHRIGKHDLCLDIVPPGYRLTSRRDENGQLQREVEYDSTAFFLSSWLRCLVFNLMSLFAKRLGGEYARMWAGTLLRKFIRRPATLYLIGNELHVVFDPFQNQDDLRPLLDELNAKRVQLPWLNGLVVQFSIEEDEPLHPLAEPEKRNRLFGDG* |
| Ga0117905_1165077 | Ga0117905_11650771 | F088317 | MPGPEDHVKYPPPPKITQEETSKNLPKSKRDHYEGVKVPPLPPLEKSQVLRVIESGFKEKEDIGRYVMTPPPELPYRILPLQTKFVSTNTRHLKEIGAFRTLMPELFGEAGYKAVDDAYASFAYSEFAAAQRRGQLKNAPNCTAREIGTYIATAYDIQNFPIVVAEATDDRVRIQLYKGLPVYCPYDVRRGDY |
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