3300008990: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007_MT3

Overview

Basic Information

• IMG/M Taxon OID: 3300008990
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118003 | Gp0126688 | Ga0104240
• Sample Name: Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1007_MT3
• Sequencing Status: Permanent Draft
• Sequencing Center: Georgia Institute of Technology
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 21831334
• Sequencing Scaffolds: 13
• Novel Protein Genes: 15
• Associated Families: 15

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	8
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	3
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Freshwater Microbial Communities From Lake Lanier In Georgia, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Lanier In Georgia, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater lake biome → freshwater lake → lake water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Lake Lanier in Georgia, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000191	Metagenome / Metatranscriptome	1666	Y
F001280	Metagenome / Metatranscriptome	732	Y
F002501	Metagenome / Metatranscriptome	553	Y
F004760	Metagenome / Metatranscriptome	424	N
F009426	Metagenome / Metatranscriptome	318	Y
F010602	Metagenome / Metatranscriptome	301	Y
F011914	Metagenome / Metatranscriptome	285	Y
F015208	Metagenome / Metatranscriptome	256	Y
F046859	Metagenome / Metatranscriptome	150	Y
F061795	Metagenome / Metatranscriptome	131	Y
F068878	Metagenome / Metatranscriptome	124	Y
F090468	Metagenome / Metatranscriptome	108	Y
F091905	Metagenome / Metatranscriptome	107	N
F091922	Metagenome / Metatranscriptome	107	Y
F096663	Metagenome / Metatranscriptome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0104240_101237	Not Available	967
Ga0104240_101979	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	780
Ga0104240_102153	Not Available	747
Ga0104240_102224	Not Available	737
Ga0104240_102586	Not Available	685
Ga0104240_103093	All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon	627
Ga0104240_103140	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	622
Ga0104240_103211	Not Available	616
Ga0104240_103474	Not Available	594
Ga0104240_104238	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	541
Ga0104240_104441	Not Available	530
Ga0104240_104582	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	522
Ga0104240_104731	Not Available	514

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0104240_101237	Ga0104240_1012373	F004760	MPVYQYEDTRNGKVVELEKAVAERDSVPRYLKRFQVPQRLTLVGVGEPLDNPLGVNQTNLLKGYYRQEQKLGSRFRSQYTPDSIKRAAIRRK*
Ga0104240_101279	Ga0104240_1012791	F000191	ASGYTVGNLVNQHVRFIETGEKDPLMTYEKALITQSRPGEIPSID*
Ga0104240_101979	Ga0104240_1019792	F061795	MRHISTLTDDELEDCIDGSSNLTMIRDILTKHGVVGNDGYLDPEVFADWFAQGVEAYIEAEVDSDEWTEANDNNWNWGYDIADNINMLLMPQEEVDKT*
Ga0104240_102153	Ga0104240_1021531	F009426	STAMTMKVNKDLKLSLDMIVGETPYSIMLFMTTSPCVISVGSARETLFEGKADYCMNVCE
Ga0104240_102224	Ga0104240_1022241	F068878	MTEKTKKWSDATVNQLMSLVGTQRPVSPDTVEYAAEQLGEEFTPRSVASKLRQLDVEVASMAKEKTSA
Ga0104240_102586	Ga0104240_1025862	F010602	MGIYDNGSIFGIRIYNFNDDGFANILFEEKYDEIMSYGQMREAYLFYTELNNKDQLHFQYYTECSSTYGEGIYLSWYPLSLNLFLEKFGI*
Ga0104240_103093	Ga0104240_1030932	F091905	MSINMNKPIGATQKQLEENNIEWVYCPDYSHRGTYEPTWELRNSSEYDWAKDRAKLLQEIANLKRDCHHLAQCIDLLHVNGYTYDLILKYTKESK*
Ga0104240_103140	Ga0104240_1031401	F090468	VKLLEFTYTKQDGSVSKRAVIELVTPNKFVEGWDVSELDSDSFAKFSQTMGELRRRQHEETMQLLVNFDLKHNYRRFKPEAMTDVQVEYV*
Ga0104240_103211	Ga0104240_1032113	F001280	MCYECGCETNVSTQGATPVAISDVSRDGESGLTLGMVSTPEQTRQFINE*
Ga0104240_103474	Ga0104240_1034742	F011914	MINNSQIKALSEDELAYLYYCLKSEWDSKNMSYEFDWYILKASRNNMIQPILNKYSANLTDENKGLIMQILNKLEANI*
Ga0104240_104238	Ga0104240_1042382	F002501	MWCGKCGGRVFVDKGFFQKLHMELFCIMCGKRWMCNKETSAFGRWLEKKRNSNLKKLRYFFLNNKIKK
Ga0104240_104441	Ga0104240_1044411	F046859	RGLFCFGIIKMKKVLSLMLAGIALIANQSHAVTFFADNFEAAGAAGATKIGAPWEMNKQVYQAPTVANADGVLGGYVGGWYPGTTFGPNAIVSGEGGVNQGLYQGKLWPDYDGWWGDWTGNKVVKTSLLVSIVSLSAADIAPGQIQMDFDYKLQPTLGPNTSVYSFAKILSADWSQ
Ga0104240_104450	Ga0104240_1044501	F096663	MKSQLEKDLEIKESFIDLLNDIYPTVKIGYSTFTPAEILECCDP
Ga0104240_104582	Ga0104240_1045823	F015208	TKGKLMYKITVTYDEAKSPNFAFEYSDELQAHKEFAKFVDWGFADKYSTVNLYTPSGKCYTKIFYREGRRVVEK*
Ga0104240_104731	Ga0104240_1047311	F091922	MSKIINYTAELEQLVVNTLLPAYEDYCRRYPFSPLAKGPINSDIVREVKHSKDCGALLKPRKNLS*