3300008955: Marine bacterioplankton communities from the North Sea island Helgoland off the German coast - probe E228

Overview

Basic Information

• IMG/M Taxon OID: 3300008955
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117982 | Gp0126721 | Ga0104273
• Sample Name: Marine bacterioplankton communities from the North Sea island Helgoland off the German coast - probe E228
• Sequencing Status: Permanent Draft
• Sequencing Center: Max Planck Institute for Marine Microbiology
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 6551951
• Sequencing Scaffolds: 16
• Novel Protein Genes: 20
• Associated Families: 18

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses	1
Not Available	12
All Organisms → cellular organisms → Bacteria	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Bacterioplankton Communities From The North Sea Island Helgoland Off The German Coast
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Oceanic → Unclassified → Ocean Water → Marine Bacterioplankton Communities From The North Sea Island Helgoland Off The German Coast

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → marine water body → planktonic material
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: North Sea off the coast of Germany
• Coordinates
  • Lat. (^o): 54.18194
  • Long. (^o): 7.9
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000751	Metagenome / Metatranscriptome	907	Y
F002629	Metagenome / Metatranscriptome	542	Y
F005129	Metagenome / Metatranscriptome	411	Y
F007892	Metagenome / Metatranscriptome	343	Y
F010726	Metagenome / Metatranscriptome	300	Y
F012505	Metagenome / Metatranscriptome	280	Y
F015798	Metagenome / Metatranscriptome	252	Y
F016738	Metagenome / Metatranscriptome	245	Y
F019836	Metagenome / Metatranscriptome	227	Y
F020179	Metagenome / Metatranscriptome	225	Y
F045764	Metagenome / Metatranscriptome	152	N
F048166	Metagenome / Metatranscriptome	148	N
F051164	Metagenome / Metatranscriptome	144	N
F053569	Metagenome / Metatranscriptome	141	N
F061271	Metagenome / Metatranscriptome	132	N
F062159	Metagenome / Metatranscriptome	131	Y
F086166	Metagenome / Metatranscriptome	111	N
F101265	Metagenome / Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0104273_100001	All Organisms → Viruses	23014
Ga0104273_100005	Not Available	14398
Ga0104273_100008	Not Available	11716
Ga0104273_100013	Not Available	7325
Ga0104273_100030	Not Available	4177
Ga0104273_100247	Not Available	1305
Ga0104273_100306	All Organisms → cellular organisms → Bacteria	1179
Ga0104273_100349	All Organisms → Viruses → Predicted Viral	1118
Ga0104273_100370	Not Available	1085
Ga0104273_100432	Not Available	994
Ga0104273_100488	Not Available	935
Ga0104273_100539	Not Available	894
Ga0104273_100564	Not Available	875
Ga0104273_100643	Not Available	822
Ga0104273_101123	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	619
Ga0104273_101402	Not Available	549

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0104273_100001	Ga0104273_10000111	F020179	MNKSKIKMFFLGLLHLIISPVYIPAMILWEERDDIKDYYSQCFKAVTFRRM*
Ga0104273_100005	Ga0104273_10000523	F012505	MSKFMIYNADEVTFILAKTLDEARQWAIMYCDHSHEIIVREVSDIKYKY*
Ga0104273_100005	Ga0104273_10000527	F007892	MGRLTEISPQQNVVNKINAKADFTHNINNTRLERYTVSTQNVFIGKNPSLFLKDTWKIVDDAFNSDQELLGGWLSEDDIYFLDYGLSVTDLKKAMKIAKFNKQLAIYDNVSQKVIPVAD*
Ga0104273_100008	Ga0104273_10000813	F000751	MKIYKAVFDTEQQGKDYLLNIGVLIEQDGDEGVEIVFAPTTAAVVYVGKVVEIPGTYGPDGEVITPPVYYPGFAIDVMSSSDLDFGTYAVYPADKSAHSFFGYPKDAEVPPPTTPEDKAKAIIEE*
Ga0104273_100013	Ga0104273_1000138	F015798	MSNMPDFEAGQLVNAVTQLNKDVESLTKTMAKLNDRLAAQEIQLAKGKGMAAGVIVLAAVLGGISSYLMGRM*
Ga0104273_100030	Ga0104273_1000304	F016738	MKDYLPKPKLKSPYKDLINDYQGSVTKATWGESGGLCHIFKSQLNPTARKKYNKERKVA*
Ga0104273_100247	Ga0104273_1002472	F019836	MQKAELELPVKQFHRLYDLLGDILDHEAETNDFNMENNDIELIEDIRTELFNQIPDEKTYTDYAVTGRSSNPSIQAGKLYKIVEQTSKHGFKLEVEDGEVIYCLFKNCAFLNGRDWTIINVEN*
Ga0104273_100247	Ga0104273_1002473	F045764	MKLTDEEIKEIADRMDDLMWEGFHDIVDDVYRQREDSSYDYEIWDEDIIKVRKELKKCL*
Ga0104273_100247	Ga0104273_1002474	F062159	MPIIMKNLTEEYVNIDWSGICEDFDLEYGDISPEQSFEIDRALGNINEILHDFINQNK*
Ga0104273_100306	Ga0104273_1003062	F053569	MTDIYLEALSDLHKLWEYSNPYCKKLNAEKHSAYKKAALKIIDAIDRGDT*
Ga0104273_100349	Ga0104273_1003492	F048166	MITKLAGYYSIGGNPVAVSEGLEVSFSDDKELIIYTTEAEFLEAFPELEGDE*
Ga0104273_100370	Ga0104273_1003704	F010726	ALIVLINGTVDVKATSHWHDLNRCKWFAERLTIQGARQRYDTPVMAYCVPKYVEPNKVLIHD*
Ga0104273_100432	Ga0104273_1004324	F005129	NLMHNSVIDLGIFTVKATTHTFLFEAKETDWGADINETELEFYVNNKRCKYVGFKELYTQLYGNSFNTWEVDLTRQIEGVVAKRIVKEYPGTDVNF*
Ga0104273_100488	Ga0104273_1004882	F086166	MDYMIKKVDGVGYLPIVLDEFSNEIYRGEYHQNAHDAIDASLSFVDEHYCSDCNMSVYHKDFTWHHPEALRDDQMNQAR*
Ga0104273_100539	Ga0104273_1005392	F000751	MNIYKTNFPTEQEGKDYLLSIGVLVETDNEIVFSKDTAAVVYIGKVVKIPATYDADGNIITPAVYYDGYAIDVMSSLDLDFGAFMVYPIEAAHSFYGYARNAEVPK*
Ga0104273_100564	Ga0104273_1005641	F005129	MKYKVKIEDRSLSINLMHHSYIDLGLFAVNATTHTFLYSAVKTDWGADINETETEFELNGKRCSYVGFKELYNKLYNNSFVTFEADLIRQ
Ga0104273_100564	Ga0104273_1005643	F061271	MIQELDRVVHQWCDDNDRWMYIEYDRDGIVMGLNFMQGDEYECFKKSWCVSDKGLTAFYKQMLYTFATEQKNVPEHCFINSCMWAYHSAISEYEDNNCKIGNAKKCCKAISGR*
Ga0104273_100643	Ga0104273_1006432	F002629	MEVNKAAWEKLKKQIEYHTQQDSEITDVLINYQVKQGKKNYLKLNITIDDFTN*
Ga0104273_101123	Ga0104273_1011231	F051164	FLSSQTVFGQWEKQFYVDENGVPTKDSYESLRAWGTFSNDQAKEQDASYIFIKDDASITVKIFEYNTEVPSSSQASFQDVVLTKPDGNIAKIKRVFFTKKGALFFSKGKFCEKDQICLWHLLESWVVNKDKFADFIKQTQNPGTYTMVFDRTVGDTKNNYKATFTL*
Ga0104273_101402	Ga0104273_1014021	F101265	LGGNEISGLKLAIVLRLKRNYHCRSTDVGEDYDLRVIFSKSIGGYIVKTSSSELVETN*