3300008924: Microbial communities from freshwater in the western basin of Lake Erie, USA - 882-3

Overview

Basic Information

• IMG/M Taxon OID: 3300008924
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117964 | Gp0126291 | Ga0103702
• Sample Name: Microbial communities from freshwater in the western basin of Lake Erie, USA - 882-3
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Tennessee
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 5921722
• Sequencing Scaffolds: 6
• Novel Protein Genes: 8
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	6

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Microbial Communities From Freshwater In The Western Basin Of Lake Erie, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Lake → Unclassified → Lake Water → Microbial Communities From Freshwater In The Western Basin Of Lake Erie, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater lake biome → freshwater lake → lake water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: western basin of Lake Erie, USA
• Coordinates
  • Lat. (^o): 41.76
  • Long. (^o): -83.31
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000237	Metagenome / Metatranscriptome	1498	Y
F027110	Metagenome / Metatranscriptome	195	N
F030411	Metagenome / Metatranscriptome	185	N
F038100	Metagenome / Metatranscriptome	166	N
F044534	Metagenome / Metatranscriptome	154	Y
F076911	Metagenome / Metatranscriptome	117	N
F081389	Metagenome / Metatranscriptome	114	N
F096677	Metagenome / Metatranscriptome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0103702_100792	Not Available	921
Ga0103702_101024	Not Available	797
Ga0103702_101956	Not Available	562
Ga0103702_102208	Not Available	526
Ga0103702_102295	Not Available	514
Ga0103702_102312	Not Available	512

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103702_100785	Ga0103702_1007851	F000237	FVLSYLHILKKIFIKNYIVAESDG*LLGGYAFF*FHIIVFLGISLSATHLSDLTLTIGANIF*SVLNFAYKTYYIIFTNKHLNTDQLTRLMMLHYFAP*YYLYLVQLHLMFCHES*DTDSGENTLEDKSGTYVS*FYDGLLKEVQDA*F*SQFVFIY*VTHHFHASTVNYHFFER*NISELDEIRFYGVAPH*YFRPLMGLLTITPTHYEGLL*MAT*FILLGALPLINSFYNSGLRYVPVIPMQSSILQTSAFIIYMLSMYCAASMLPCGRYYYDPEGGYVGNP*VKFSYQYAYLYMA*IIHHLDV
Ga0103702_100792	Ga0103702_1007921	F081389	DDSTRRNECQYVSDLNIISCFRGLVECETIAHFEELSQNYEIFGIGTTDMIKFNLYPRNFSDSVYGDCRQQTTTGNWVELSFYATGQQPLTTSRGLMVKDATCYKRIIDLIKVIDYQVMVDLVTKQRVTMLGYINNLSGETIRIQREQNNGTLPFGKSLGKKLDLDIGRKFDRMEVDSVVAGNPLMAPVSGFIWGSLEDTNRRFECQYSSELMTLSCFRGLVKCETLPRLDDLAQTYEIFGLGSTDMTTFHLYPRNYADTTFADCRVPLTTGKTVELNLCHTGVDCMGLMVRDTVCYQKIVDVLKT
Ga0103702_101024	Ga0103702_1010241	F027110	NKHSFEMAFGHSKPRQISKPQSCVAASGDKMSSYGVFEIDLFIKGKKFTHPVNVIEELNENIIGIDFIHAHKLTYDVISRKVMFAGAGTNSIMALKNTVLPAMTSTVIKAKFKGTRDEKATYVANICAPRTPMVSGMPSIVNIDENNICNIIVENCAPYDVTLERDDILGVMETETDELVPLTDDFISSVCQDIHNRFPKVKRKRLSRDEIKRRCHLQVPEEFHEWYLDILCKHQDALSIDKYDLGLAKDFKHKIHLKTQDPVYR
Ga0103702_101956	Ga0103702_1019561	F076911	MKVASDVLLLLCLHDFGLWVSVGLGQATAFLYSEARLYKGPRQSPLPQLTATRSTGK
Ga0103702_102208	Ga0103702_1022081	F096677	MKVVSDVLLLSYLDKIGQSPMVEAGQAPARPYSEARPHKGPRQSP
Ga0103702_102295	Ga0103702_1022951	F044534	GNGWWQLVPPSPPNRVSGMAGIYHQFLWPESCPVSSHTNQELSREARLETAPNGVRPTGRFDPCADAVTPEGFGCYCADQNAVAISGGTTPPKGPARSTSRARKEIVTAGRDRT*
Ga0103702_102312	Ga0103702_1023121	F038100	DDVESNRQIEIKTVDNCPADNIVKISESYRGYRSLTSVENCIFIRKQSIDKLLQVCVQTLNTLLLPPKEDLNLSFGCYASRMLKDHSSGMSYFVDITREPMQEHGFRFVRIFQQTTFNQKDVGNVDIPWNHFDVFTRELNGFLKTPGRLATFFPKASKLQRTKL*
Ga0103702_102392	Ga0103702_1023921	F030411	KMDKDRPRSPFSQSTASSASFDVLGDDLISSLDEDFQCTPTWKDFPFIQQKVVGVRVEITSTSYRNQAITYKAVIAGYIDRPGLGLELAKLEKDGTLFTSSGLYVLFCHITDLKLLDNINANCIDVLGKLHPLKYVPVHKAAYDHTYMIETFGHNQPNPILHYDNNP