3300008915: Microbial communities of nutrient treated water from Blanes Bay, Barcelona, Spain - KA1

Overview

Basic Information

• IMG/M Taxon OID: 3300008915
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117944 | Gp0126069 | Ga0103480
• Sample Name: Microbial communities of nutrient treated water from Blanes Bay, Barcelona, Spain - KA1
• Sequencing Status: Permanent Draft
• Sequencing Center: Sodertorn University
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 21236861
• Sequencing Scaffolds: 14
• Novel Protein Genes: 15
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	3
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	3
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium	1
Not Available	6
All Organisms → cellular organisms → Eukaryota → Haptista → Centroplasthelida → Panacanthocystida → Acanthocystida → Marophrys → unclassified Marophrys → Marophrys sp. SRT127	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Microbial Communities Of Nutrient Treated Water From Blanes Bay, Barcelona, Spain
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Unclassified → Unclassified → Bay Water → Microbial Communities Of Nutrient Treated Water From Blanes Bay, Barcelona, Spain

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → bay → sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: Barcelona, Spain
• Coordinates
  • Lat. (^o): 41.666
  • Long. (^o): 2.8
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000237	Metagenome / Metatranscriptome	1498	Y
F003081	Metagenome / Metatranscriptome	508	Y
F007527	Metagenome / Metatranscriptome	349	Y
F009426	Metagenome / Metatranscriptome	318	Y
F011139	Metagenome / Metatranscriptome	294	Y
F022892	Metagenome / Metatranscriptome	212	Y
F030104	Metagenome / Metatranscriptome	186	Y
F034583	Metagenome / Metatranscriptome	174	N
F074917	Metagenome / Metatranscriptome	119	N
F090440	Metagenome / Metatranscriptome	108	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0103480_100032	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	6835
Ga0103480_100571	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	1457
Ga0103480_100614	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	1400
Ga0103480_100659	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	1339
Ga0103480_101452	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Oligotrichia → Strombidiidae → Strombidium	864
Ga0103480_101509	Not Available	848
Ga0103480_101966	Not Available	747
Ga0103480_102043	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea	735
Ga0103480_102364	All Organisms → cellular organisms → Eukaryota → Haptista → Centroplasthelida → Panacanthocystida → Acanthocystida → Marophrys → unclassified Marophrys → Marophrys sp. SRT127	679
Ga0103480_102533	Not Available	654
Ga0103480_103205	Not Available	584
Ga0103480_103505	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	559
Ga0103480_104099	Not Available	515
Ga0103480_104397	Not Available	500

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103480_100032	Ga0103480_1000323	F003081	MFNDTRFGFEVFHMHVRGVDALMVLSYMHILKKIYLKNYVTAESDG*
Ga0103480_100571	Ga0103480_1005711	F003081	MPEPGLVIELREEMFNDTRFGAEVFYMHVRGVDTIFVLSYVHILKKIYLKNYVTAESDG*
Ga0103480_100614	Ga0103480_1006141	F003081	MPEPGLVVELREEMFNDTRFGAEVFYMHVRGVDTLMVLSYMHIMKKIYLKNYVSAESDG*
Ga0103480_100659	Ga0103480_1006591	F011139	MGILTIAPTHYEGLMWFVLWLVLLASLPLLNTFYNPYNRYLSVIPTQNSVLQTIFFILFMMSLYCAANMLPCGRYYYEEEGGYVGNP*
Ga0103480_100734	Ga0103480_1007342	F000237	MFHYFTPWYYLYLVKLHALFCHES*DSDSGENVYEDKSGTYVS*FYDAFLKEIQDA*Y*TLYVFVYFFIHHFDASTVNYHFFER*NISELDEIRFYGVAPH*YFRPLMGLLVVSPSHYEGLM*MGL*FVLLASLPIIYNLYNSNNNYLSIIPMQSSMLQTLFFILFMLSMYCTASMLPCGRYYYAPEGGYVGNP*VKFSYQYAYLYMAWFLHHLDLIEHYGFQYVNHMLLKHSNIKKAIKARSLKLGYRVPIKHIKK*KKHQTISESYFFIRSLSQKKFF*
Ga0103480_101452	Ga0103480_1014521	F030104	MTLLTFDDDQDEIIEFVDSSFFYMFTIVVLYLIYKHSIHYFAFLEASVSEGRSVNFVTVQFVKDFLATFSLMLRFYILLFRMNVYDTLEDFFDSYYIFIGDFDDDEYLNELFLSIHGTILFTFDNHDDRSFLFEDENDFSADLFYSYYVI*
Ga0103480_101509	Ga0103480_1015092	F007527	VFKSGTSIGLKTSIPFGGQTEPISITGAKAAAKKAQKKAKKNIISDTINNSIPYRKPS*
Ga0103480_101966	Ga0103480_1019661	F074917	MRFAETKRQKPTSFLTTKAKNKLDTIRQNPINQQKKQCGDRCHYKHSQCSSAGFTPRRPGNPVDFLTDLSNKLCGRHFSHRYLPIQVLINHDMAINTLRFLWVFDQANGQHLLRSIL
Ga0103480_102043	Ga0103480_1020431	F011139	MGILVIAPTHYEGLMWFGLFFVMLGFLPLFYNLYNTFNKYVATIPMQNSILQTSAFILFISSLYCTASMLPCG
Ga0103480_102364	Ga0103480_1023641	F034583	ESSVSLLLFFWTLIFLFVYILVPLIKLRFVIVSEKNSSHELEKTCTPFYGNTFKFNDTIV
Ga0103480_102533	Ga0103480_1025331	F022892	MNPLAKSIGVFKTIDPPNIVAIQLKILIPVGTAITIV
Ga0103480_103205	Ga0103480_1032051	F090440	GGNEISGLKLATDLRLKRIYHCRSTDVGEDNDLRIIIRKSIGG*
Ga0103480_103505	Ga0103480_1035051	F003081	MPEPGLVIELREEMFNDTRFGAEVFYMHVRGVDTLMLLSYMHIMKKIYLKNFVTSESDG*
Ga0103480_104099	Ga0103480_1040991	F007527	VFTKGTSKGSKALIPFGGQMFPISIVGAILAAKKAQKKAKKNITSETINRIIPNRKPR*
Ga0103480_104397	Ga0103480_1043971	F009426	TATKVNKNVKLLLNMTFSEILYTIIFFMTTSPCVISAGAARETLFEGKADYCMIVCE*