3300008801: Planktonic communities from eutrophic pond at the campus Essen of the University Duisburg-Essen, Germany - sample NO3-3

Overview

Basic Information

• IMG/M Taxon OID: 3300008801
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117972 | Gp0126357 | Ga0103768
• Sample Name: Planktonic communities from eutrophic pond at the campus Essen of the University Duisburg-Essen, Germany - sample NO3-3
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Duisburg-Essen
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 61143111
• Sequencing Scaffolds: 5
• Novel Protein Genes: 11
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Eukaryota	1
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Harpacticoida → Harpacticidae → Tigriopus → Tigriopus californicus	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Planktonic Communities From Eutrophic Pond At The Campus Essen Of The University Duisburg-essen, Germany
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Eutrophic Pond → Planktonic Communities From Eutrophic Pond At The Campus Essen Of The University Duisburg-essen, Germany

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater biome → eutrophic pond → planktonic material
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Water (non-saline)

Location Information

• Location: University Duisburg-Essen, Germany
• Coordinates
  • Lat. (^o): 51.46
  • Long. (^o): 7.0
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000044	Metagenome / Metatranscriptome	3572	Y
F000070	Metagenome / Metatranscriptome	2710	N
F000241	Metagenome / Metatranscriptome	1481	Y
F000306	Metagenome / Metatranscriptome	1332	Y
F006424	Metagenome / Metatranscriptome	373	Y
F020307	Metagenome / Metatranscriptome	224	Y
F030134	Metagenome / Metatranscriptome	186	Y
F030772	Metagenome / Metatranscriptome	184	Y
F080070	Metagenome / Metatranscriptome	115	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0103768_1007996	Not Available	727
Ga0103768_1008886	All Organisms → cellular organisms → Eukaryota	688
Ga0103768_1010175	Not Available	640
Ga0103768_1012240	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales	579
Ga0103768_1015960	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Crustacea → Multicrustacea → Hexanauplia → Copepoda → Neocopepoda → Podoplea → Harpacticoida → Harpacticidae → Tigriopus → Tigriopus californicus	502

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103768_1004696	Ga0103768_10046962	F000306	AYAPAPAYAPAPAYGYEQPKHNCSVQDVTEIADVCTPAFETKCAPVELAIKKIVDKEFCYDVVRTVCTESIEEIPNEVCSFAYQQKEEDTTAKTVEVTFVKEVKVQMVTVCQPGYGGYGGYGGYGASQQYCKEVAQETAFNVPVVTPVDVPVKVAYPEAIRTCVNKPIALPRVACENLTEKKCITVPEIENAVEAVEKCDTQLAAPACQKVELTLPKQVCIELVYGYAEDPAPAYAPAPAYAPVPAYGPVA*
Ga0103768_1006333	Ga0103768_10063331	F000241	GAEPKTANMTRRTLLPLVFAGAAVTYVFSSTMSFVGSFRPSTCRGDLVPARVSAEYLERCGPKDSDVPFDASAATGPGADVTFKKRPFGILRYQPGNGGKGAMAMEIIPTSRYPGDPQGQAMVAGVKSGWVVKSINGVNVLTESFGKIMDLLDDEVADPRFSKSTALALEKQGGRLAPAADTPLSISYASIPGYVYKGKELKQDGQDGFAR*
Ga0103768_1006739	Ga0103768_10067391	F000241	MTRRTLLPVVFAGAALTYVFSTTMSFVGSFRPAHCRGDLVPARVSAEYLERCGPKDSDVPFQSSAVTGPGADVTFKKRPFGILRYQPGQGGKGAMAMEIIPTSRYPGDPQGQAFSSGVKSGWVVKSINGVNVLNEDFGKIMDLLDDEVADPRFSKSTALALEKQGGRLAPAADTPLSISFASIPGYVYKGKELRQDGQDGFH*
Ga0103768_1007996	Ga0103768_10079961	F080070	MKSLLIVLAVCIASTLGAHLNAREVAQKDLISTIVTSLGLDSVWSTITALGSSVYLQFINIGTQLLFAGQQVWAQVKPVLAQLVSDLTNHAGDAVTIVAQTIASLNQIIGGSGKRDLVSSIVSSLGLDQVWSTITSLGSAVYLQFIQIGTQLLFAGQQIWAQVTPVLSQLKDDLINHTGDAVTIVAQSIASLNQILG*
Ga0103768_1008005	Ga0103768_10080051	F000044	PKAARNGRQEVRRGRQGGVAQAGVDFSACQNDPDTGLCCVEKEETVKTIQKDPILECTHKNVEKCHYTYVTQFSPAQEEVCEENFEKTCQITFKQQAFNETVKKCYKPLEKVCNGQGPEQCRTVYESSCTTKYIEKQPGKFVGDTNCEKLPVEICGAGCVTEEGPEECHDKIITSLVDVPEETCDLNPQKTCRFQTKLVPKLKPVAECTTIPQEVCNLKFSQPQEVDKPLKTKWCLDPTPAE
Ga0103768_1008886	Ga0103768_10088861	F006424	VIGSGRVDSVFVGNDFPELGTDLVTALSSLDVNYFSHLF
Ga0103768_1010175	Ga0103768_10101751	F030134	LQTRIPFVLTGFMMYKDKIQPVLQRFKLRSCTFLIVEQTNYICDYNTYEKIIQHRGSSYIYR*
Ga0103768_1012240	Ga0103768_10122401	F030772	NRHHASTVDLLQQGEFGWDPEEFHYALQQWSDKWYCLMLTVPWVPVIHFLGLNDTGALFAMEWWCHFPDEGAGGKCNKEFWTKWVPRRVKHNAFVLSLWACIWLLGTWPLGRPLSEGWRFMFTVSFFARLGFSAAWMFITNFTHSLPWNRFLANDPARTWPLLHDIMALVLGGKHRWNEMLFHDVHHAFPNA
Ga0103768_1014498	Ga0103768_10144981	F000241	AGTGPGAEVEFKKRPFGILRYQPGQGGKGAMVMEVIPKSRYPGDPQGQAFLAGVKGGWVVKAINGQDVQGEAFGKIMDLLDDEVADPRFSKSTAVALQEQGGRLAEASALPVKVTFGTIPGYVYKGKELTADGQDGFAR*
Ga0103768_1014752	Ga0103768_10147521	F000070	ADTEARLKNDIRQKQQEAFEKIGAVEQQAELRSAEASRRLGALDLRMSGVQGGLGEHKRDILKLREEVNGLTVKSASHEVDIQKNSDAARKMEKQRNMDEQNWKAQMDAVHDVLDTKVNEKPFEDLKHCVASLTKGVVKFAQVVGVFPGPKFDDADGADQGEADVELLGWEECA
Ga0103768_1015960	Ga0103768_10159601	F020307	TAHNLFMDMPQGDHKKRAKYRFASKTLMRILPGDLKNEVEGLIAKNTMTLDLYEILGQCTWGQRSL*