3300008756: Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 763496533 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008756
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053079 | Ga0114092
• Sample Name: Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 763496533 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 71893678
• Sequencing Scaffolds: 10
• Novel Protein Genes: 10
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1
Not Available	2
All Organisms → cellular organisms → Bacteria → Fusobacteria → Fusobacteriia → Fusobacteriales → Fusobacteriaceae → Fusobacterium → Fusobacterium nucleatum	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002994	Metagenome / Metatranscriptome	514	Y
F042387	Metagenome	158	N
F043235	Metagenome	156	N
F045567	Metagenome	152	N
F051213	Metagenome	144	N
F061926	Metagenome	131	N
F063777	Metagenome	129	N
F071328	Metagenome	122	N
F077405	Metagenome	117	N
F097527	Metagenome	104	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0114092_107862	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1442
Ga0114092_108821	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1296
Ga0114092_111190	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1052
Ga0114092_111849	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1003
Ga0114092_112733	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	945
Ga0114092_115208	Not Available	817
Ga0114092_117358	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	736
Ga0114092_118476	All Organisms → cellular organisms → Bacteria → Fusobacteria → Fusobacteriia → Fusobacteriales → Fusobacteriaceae → Fusobacterium → Fusobacterium nucleatum	700
Ga0114092_120568	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	644
Ga0114092_122454	Not Available	600

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0114092_107862	Ga0114092_1078624	F097527	MIYFKMEKIGNSTYNKEKKTRSENLVFITIPAAGVEPARPW
Ga0114092_108821	Ga0114092_1088212	F051213	MKASKLLWAVVMALTFVLTSCDPFSKNEPTIEGDRYKYFDSSAQRQSFRVVNGSGKQYNRKVDWHIIGIQEENSDTYLTKKVDTLSNGDFRISYDWVTFTAKENKSVIDVEVQKNETGKDRSVFFATSNSYKQAYLPNMIVTQRAK*
Ga0114092_111190	Ga0114092_1111901	F043235	VPAEEGHLLMDLCHDDPRSLCSGLGIVTRYPEGAIALFIGLAHRDQCDIDRIDTIPKEVWEFMEVTREIVDTLIQVSGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRSMASNVLLPGSAH*
Ga0114092_111849	Ga0114092_1118492	F061926	MIKTAKHIKTFLASVLLLIFVMNVSGLFVRLHHQETHQKTEKIAECSDKVCYHKAHLQTKSDCDCGFLCTLNYFYILPEKPLTEIHVNEYFSYFSSYKIFVSERIILLWQSRAPPVLS*
Ga0114092_112733	Ga0114092_1127332	F063777	LIGWGIYSGISSIISAVKEDFFGIKDKTNIKTSKNILFENEQFKLKKEDYLPDENSQEYKIFNDFCAKSNEHLNDDDGYIFYKLTDEKSATDLNGAIISEFQEDIGNYILLQNLILEDNQLKNQLISFNKNTGKIIVLADIKDFFWLDFDSETKTINGYNNKEQIEIAISE*
Ga0114092_115208	Ga0114092_1152081	F077405	KQRGVFYGFILLCQIKFVKKFFDWLKIIQKQKVRLK*
Ga0114092_117358	Ga0114092_1173581	F042387	NKVISKRFEYQNDNELKEIIDEGSGERIVFVYEKDFITSKIRYSQAGEELGKTNYEYSNGKLSSVIDEVVISDSGIQYKRVVTREYHYNGSEVSVNENIKYHSESYAYNLRDENFTHTYVLNGENITKIHHEISKNVSNGHFYLNPNNMVVIDEEVTYDTKNSPYKNIKGFSALATEFCSLDKDENTIADYLNFRWASHNPTLIQKSINLYGSGADSSEYKFQYEYKNNFPIKTKLNINNQTVI
Ga0114092_118476	Ga0114092_1184761	F002994	AIHEKDDLLDSQEDFLIKENKKHVKVKNAYALEVEKCEKLSSELSTCREMIDNLRNENANAKVDSHVCNVSIPNPRDNNDDLLARIEELNISLASLRIENEKLLAKAKELDVCNASIFDLRDNNDILRAKIVELNSCKPSTSTIEHVTICTRCRDINVDAIYDHLALIKKQNDHIAQFNAKINEHDLENEKFTVETFQKSNGDYNYYVEDKQGFLQFFPSGIFETTEANRTK
Ga0114092_120568	Ga0114092_1205681	F045567	LLWGAGGEARRAWVRMVTEDVVHTSTHRVKDALLPVDGDILTPCDGTHIVQTERVVVVLVSQENSIDTIDTETCGLVVEVRATVDEDTLPTLGDDEGRGAQTTVTSIRAMAHWAATAYLGDTSAGARTEKNYLHVSRRESYHGKEIPSLSSERGCVVERVVRLISSEVKGGYLRDVPHLRGDL*
Ga0114092_122454	Ga0114092_1224541	F071328	THIIRYIEEYERNPLLIERMKWEFILEGEYIVEFVKLCKHLVLERTIDPKKHQAAAIYLRYSLQLLLKKRRAIRRLGVEKEYVSAILRQYGIHYREYGDNEHRVFFLDTGINLYFSKHDQSSIYIIQRIEFSNEEYRSFILKVLPVKKSEW*