3300008747: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 763982056 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008747
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053335 | Ga0115677
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 763982056 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 94446712
• Sequencing Scaffolds: 10
• Novel Protein Genes: 13
• Associated Families: 13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	5
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Veillonella → Veillonella tobetsuensis	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus parainfluenzae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026592	Metagenome / Metatranscriptome	197	Y
F054110	Metagenome	140	N
F077405	Metagenome	117	N
F080166	Metagenome	115	N
F081455	Metagenome	114	N
F089057	Metagenome	109	N
F092229	Metagenome	107	N
F092232	Metagenome	107	N
F095629	Metagenome	105	N
F099452	Metagenome	103	N
F099453	Metagenome	103	N
F103435	Metagenome	101	N
F105379	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0115677_100442	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	30600
Ga0115677_100711	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	20574
Ga0115677_100827	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	18385
Ga0115677_100838	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes → Veillonellales → Veillonellaceae → Veillonella → Veillonella tobetsuensis	18091
Ga0115677_100878	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	17525
Ga0115677_102097	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	7678
Ga0115677_102618	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	5984
Ga0115677_108244	All Organisms → Viruses → Predicted Viral	1769
Ga0115677_111611	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus parainfluenzae	1223
Ga0115677_112229	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1157

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0115677_100442	Ga0115677_10044233	F099453	MLRRKDMNRFDVIELAQQTLTFVYNTFNGKVNTLDPYTRLNFVSGYLDTKTNIARTTPYGCIYVSLEAFADTVERQGFIDTDQIRNLALEIIIHELTHVDQLIDYKYIKFNNGYREEVELKCVKQSCQWILDNIQYIRSLGLVVIPEVYQARLANLTNVIYTPKYPIAIAMAKLEYMLGRKFREFSNNNIEIQYIDRLKTHYSFMVCENRSYINSRNLNDLGERLLNDKQYTVEYLEYGDSKLVIKITQGA*
Ga0115677_100711	Ga0115677_10071118	F099452	MDKTYAELLQETLSKIYELKDLNNRDRGKALTIFIGERLNKELLLSSMNIFNLYKEIVNLDDVSLLNDLRKTPWYKKWFTYDQENSRLIDLSKFNFRSLERFEKVEYLKDVEHYDFEKVTEVDSYSLYDTLAEEKGLNLFCFAAENILLNHGFFNNTDYQLYDVPEEYMDDQEVCMYMCLLNKDNIDFIDKDTYEDTVLWDIVKDRLFGSVYWSIRDSIEEDTRTRAR*
Ga0115677_100827	Ga0115677_1008271	F092232	PILGRVTMNTQAKFIAEYNDKNRPKFNDKFFNKSDDDIIEDLKDVILSCERNKFYTIKVLNFEVIDDYNEVQKLLIGDETPSISIKDSDLKILKVTYHVACTKDEDTFDVLIAIPRVIDGAYIHLNGNDYFPLFQLVDGSTYNNTTASSAKTQSITLKTNSNAVKMLRNFIDLNTTNEETVRAAMFSVYLFDHKVTLFEYYLARFGWYETLDKFNFEDVIKISDHDLNDPEYYTFAIANAHMKTPFYISAVKSFMDNDRILQSFVASFARAISLYATKKTTLDQIYTTEFWICKLGYNFVSSETSVFTKGNAIIESLENSYDIPTKKRLRLPDHIKEDIYSVLKWMACEFSSIRLKNNLDASTKRIRWSEYIAAMYIMLINVKLRRLPEKHDPNMEAYRIKQQLNTQPMALIAELQKSNLKGFRNMVNDRDSFLQLKYTIKGPSGPGESNSKNVARNVRAIDPSHLGIIDLNTSSASDPGVGGMLCPLNYGVYEWNSFTNEEEPNVWDENFSKMLNIYREEKGYTSAIMLADDAGLELTDTRDPAAVAFDADLLGQTIAKVARTRAFEKQLRPALINMEDSCSIYFEEV*
Ga0115677_100827	Ga0115677_10082720	F095629	MMRELIICLCLLGCFSVANANNIEQPKEVKIVHNDDSVILHKKIYQLEKRIERLEELLKKEGK*
Ga0115677_100838	Ga0115677_10083816	F054110	VNYQPTINKLLKALQMNGRRYVVDVRQSWSKYDKPCKVYIVNRMYTEEEYKLTFPHKYKKGKTFKQGQLYKKESEYSSTKQHEVLLFLVKTYKGGD*
Ga0115677_100878	Ga0115677_1008782	F089057	MINVIPLIAKKYNRKGDTSGSLKSLISDLNCVTDNDDVLLFLSSIPRETKYSLDDAFDIIVSDDIYSNIFRTSIVFLNIDLDYHRLLLNAIKSESYTIICMINKAIPTPDLFLAKNNYECLTIALDKSYAIFDKVLGMVISQIRHTASSKEGRALGIFMTICILNKDIDKLASLCTGYLATCRSEYMVKDLMNKSAMNAFQYMSEEDIHTVVDDINSRTVLSRYLNKM*
Ga0115677_101571	Ga0115677_1015718	F103435	MKFVFTTEPIYQYYRAYLYPSDKDKLDKDLMVEYGDYKDYWDLKNQQDALPENIFVAELTSRDYPRNPWNYVSQLISKLTYSYLIDNPEFENIFSEILFNQSEEEFYEFYKAIDRFYNGSEVFIIVSNDEYSDMVTQMMCNVIRRMYGIHPQVIYDIDDILNIRDDIDFSPQGAQLAYLQRSAYYKLEAKRSLEPLQIWYPFDMNTYTNALE*
Ga0115677_102097	Ga0115677_1020978	F081455	VLFKAKEKHIMETTNIQEINMKAAEKLGELFDYVFCGKKPNTEEKDIPPVEEIGAETVDIIDAAEEAIQQPLENKDSSIAVNFSQMVNKPKEEVKTEVNSVPPEGETKVNVLFPKTEHILGNYVDYDSFIKIKESNTDKVVRAIRLLNYKMSDQNAAAAFAQFVSEFNPECDPNKRLRYELIRHQGREKDLVIRLSTVINGTTKYYADIYPDLNKIDLDHHLISSAKK*
Ga0115677_102097	Ga0115677_1020979	F080166	VNILANFENYNKVVEQIFELNYYLTFKLEVTFNNIIKRINTEIKENFHTEYVVGANKLTTNLRYKYQMKLSPRGEKIGIVIDWDNYDDLCTVIEEAINICDPENKMSPFKRLYSTTGDLLDIKCDSLKVRYLHLEDRWNNKVDLIPFVLVDDNRGTLTEAMRFRFNNDLTFDVPVSRLKGFRRFLMTYNPVLHAGAMARYMAITPLLGSNRQNMLK*
Ga0115677_102618	Ga0115677_1026185	F092229	MLECMMNVNSVVRTKIYEDYEFAKDVAERRFGSTIEDLDMVTILQKCATRPYNSILNNIYFRYFNSKLIDDLFKLAESPKILDLAIEYNCDYYAVNTAKTTVRRYFPDIYYNKFAIDSTIITSCRSLNDPQVNAVKSAEFTYELLMASRAEEFTPEIVRNIFIKYGLKPNPSRNVYNRINNNLNLFYYIEDYLEEYREEGKFIYGTKEYKISKDLRRLPLMLILTQLTRKNNSGYILNSNLELVKG*
Ga0115677_108244	Ga0115677_1082441	F105379	KILYDRNYVNPIIGVGPEKSYFQTTSYMVDLSPHINNLLVDISDLKNLGKITQLEPSKENPEIAIHKPIVSVFNWDAEYIKACMNSLREYQIDDNIIARTDEFHNTDCYNELMAGSASTGAFRINIGGYMIDIPKSAIPTLKSDHVVATVYNAPNKNFNILRFKITKRNGIIVNQSMLFLPY*
Ga0115677_111611	Ga0115677_1116113	F077405	QGRALPTELFPHLLVAKQRGVFYGFILLCQIKFVKNFFDWLKIIQKQKVRLK*
Ga0115677_112229	Ga0115677_1122294	F026592	LAGGEQHLCCLRTASPQGIDAQASQGSVAPLTEQSDETFSVGQFSSADRE*