3300008745: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 764083206 replicate 2 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008745
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053332 | Ga0115673
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 764083206 replicate 2 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 131234198
• Sequencing Scaffolds: 7
• Novel Protein Genes: 7
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group	1
Not Available	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas bobii	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027205	Metagenome	195	N
F045567	Metagenome	152	N
F085821	Metagenome	111	N
F090517	Metagenome	108	N
F097526	Metagenome	104	Y
F097527	Metagenome	104	N
F101358	Metagenome	102	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0115673_1000672	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	17121
Ga0115673_1012349	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1930
Ga0115673_1012566	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1906
Ga0115673_1020397	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → unclassified Saccharibacteria → Candidatus Saccharibacteria bacterium	1256
Ga0115673_1030570	All Organisms → cellular organisms → Bacteria → Terrabacteria group	850
Ga0115673_1043235	Not Available	597
Ga0115673_1049307	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas bobii	510

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0115673_1000672	Ga0115673_10006723	F045567	MRQRDGRDTLTEELEGGITPLLYRAEGEARRAWVRMVTEDVVHTSTHRVKDALLPVDGDILTPCDGTHIVQTERVVVVLVSQENSIDTIDTETCGLVVEVRATVDEDTLPTLGDDEGRGAQTTVTSIRAMAHWAATAYLGDTSAGARTEKNYLHVSRRESYHGKEIPSLSSERGCVVERVVR*
Ga0115673_1012349	Ga0115673_10123493	F027205	VKGPRGPPLIERIHVASRLIVSADDILKAVKESEEFERKALSEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVRLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYILDEYDIPRRIRK*
Ga0115673_1012566	Ga0115673_10125662	F085821	MSNIFELLAPLAETKKQQTTVAKFIEKGFKFTRQPDAQKFTFLVYDFFVAGNMPAVQLCIDYLVAQGYPTAENEKKFLNWVFMEPVYYLKYFISDASTQKKLHHDLLNLWYESSKRQLLEQDKGKHDEAYIDTWNEANVNKTLSIIRSGETIASRKEDVAKHSKTPNDEYDQNVNLLYEYCRALLYTAETTQSQQELVAETQSHIALLKDLYKKVNKIK*
Ga0115673_1020397	Ga0115673_10203972	F101358	ERTPHPDTHSIPKRQDVPQYLWNVLRSSGQLDEGWIDAEIIDKDGTVLVRMTKPVHRSNIHQLGKCVPLAVLQEQNLDFTNAYLQRAYGVMMEDGRLQPVADTTHTASQSSATEQETEVLPAQDEKYDRTGTDGEGNRQSVAGLAKAARLDTVVDNSLLVERVLGRVKQ*
Ga0115673_1030570	Ga0115673_10305701	F097527	MIYFKMEKIGNSTHNKEKKTRSENLVFNTIPAAGVEPARPCGHWILSPARLPI
Ga0115673_1043235	Ga0115673_10432351	F097526	RLCERLDDDTVAALLHAHIRAFAADGNRQRLNRLTEAMRIAGEMEKAGRNEHPDPAEQKRRARWDSNLAGLQQQARMAHCEIVNADNAAVSQLTQQCEKNGSRDTAIPLPRDDYGFAAAVRDFPLSETQTALLWRMAQLTIAEIADIAPELAAIYLNGTGGEHLCRALVEKTVYPVTVVSNLARLLHEQHKSGQLQRDL
Ga0115673_1049307	Ga0115673_10493071	F090517	RRILSFCGLLLGLLFLASSCKNKKDTPRLQLSSVELRQTVWNGTLEYKNPKRDSYSVYLNFLSDSEVGVSGYDLKDPTYSRDLQVRYYYTITDRILTLKAQVNRELRPPMDQNTWYLIRKEPSLLVFQANAGNPDLEATLTLRKKL*