3300008736: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 200m, 2.7-0.2um, replicate a

Overview

Basic Information

• IMG/M Taxon OID: 3300008736
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118094 | Gp0127928 | Ga0115659
• Sample Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 200m, 2.7-0.2um, replicate a
• Sequencing Status: Permanent Draft
• Sequencing Center: Georgia Genomics Facility
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 124152451
• Sequencing Scaffolds: 18
• Novel Protein Genes: 20
• Associated Families: 20

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	7
All Organisms → Viruses → Predicted Viral	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	2
All Organisms → Viruses → environmental samples → uncultured marine virus	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetes bacterium DG_61	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal water body → coastal sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Alt. (m): N/A
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000711	Metagenome / Metatranscriptome	925	Y
F003679	Metagenome / Metatranscriptome	474	Y
F012162	Metagenome / Metatranscriptome	283	Y
F022559	Metagenome / Metatranscriptome	214	Y
F023963	Metagenome / Metatranscriptome	208	Y
F037425	Metagenome / Metatranscriptome	168	Y
F043979	Metagenome	155	N
F045366	Metagenome / Metatranscriptome	153	Y
F049927	Metagenome	146	Y
F056058	Metagenome / Metatranscriptome	138	N
F064080	Metagenome	129	Y
F066918	Metagenome	126	Y
F073166	Metagenome / Metatranscriptome	120	N
F078824	Metagenome	116	Y
F079194	Metagenome	116	N
F083231	Metagenome / Metatranscriptome	113	Y
F083260	Metagenome / Metatranscriptome	113	Y
F086145	Metagenome / Metatranscriptome	111	N
F096030	Metagenome	105	N
F099850	Metagenome / Metatranscriptome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0115659_102447	Not Available	8276
Ga0115659_111362	All Organisms → Viruses → Predicted Viral	2307
Ga0115659_114731	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1862
Ga0115659_117720	Not Available	1603
Ga0115659_122099	All Organisms → Viruses → Predicted Viral	1351
Ga0115659_126778	All Organisms → cellular organisms → Bacteria	1160
Ga0115659_127772	All Organisms → Viruses → Predicted Viral	1126
Ga0115659_127860	Not Available	1123
Ga0115659_128045	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	1117
Ga0115659_133545	All Organisms → Viruses → environmental samples → uncultured marine virus	954
Ga0115659_134095	Not Available	939
Ga0115659_134772	Not Available	921
Ga0115659_135842	Not Available	891
Ga0115659_136781	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	867
Ga0115659_138366	All Organisms → cellular organisms → Bacteria	828
Ga0115659_141181	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	751
Ga0115659_142740	All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetes bacterium DG_61	702
Ga0115659_143503	Not Available	680

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0115659_102447	Ga0115659_1024476	F099850	MGKMKFVICIVLFLNSCATLKVKLNPINQSNAESDDGSDEKVEKIWLEYFDILNNGELKDVLSFMKPSVIFTSNNQTITTEDHDQLFLLLKQWKENQKKKDIYIKNHSISSGKVADDFITIVDVIQGEYSNKTNELIKEKRTFYYFHRLKIKGWKLYMITSAALENEL*
Ga0115659_111362	Ga0115659_1113622	F012162	MLLSQQQTKSYLDEMIQHYGEKENNTSGHFSWERSEASYRRKAFEDMKMVLFGDDDNESKRTNSS*
Ga0115659_114731	Ga0115659_1147313	F066918	MKLLDQLVEERAEISGTQEGIVSLAAEEARDLTETEDTNLRDLKARGDQLDERITELRAVQVANLEAAKLRAEVAATDEPQERAAGRVTITDEPLTYREDGEHSFFQDMY
Ga0115659_117720	Ga0115659_1177203	F079194	MIKLFSNFLFVILLLFSMSCYSEELKPLEEILEDTNTSKNSNSFIIMKRCAALYGALYFVNPSDNSSNEFENRYKIFLQSAVLEDIKLNKINEDEAYKKQLEIFKSTLKFFIQIFLQNQKKNNSYLKNHWLEKDFFICEKF*
Ga0115659_122099	Ga0115659_1220991	F037425	MKKEWDGLRKQYAGIIKNLLNNVDICNERYIKSGDEGYMVQRKVYIKEIEKIKTMIKKKERELGYY*
Ga0115659_125212	Ga0115659_1252121	F073166	MNLNYKHLEMYLLAGIASGLLCHFSGIIDNELLYFGTNTNLSPAIILGIMIFLVGRYASGIVSRSRWFDPLILIFACGIGWDLASDFGAEYWWGVWSLTGSGIIGGFFVGLGLVVAWRLKRVWTVIMLTTLTGGLGSGLVWVLGGFDWLFIIWQGILLLGIGITIQID
Ga0115659_126778	Ga0115659_1267783	F045366	MSESNILTPQQVTIANEAEPHEILLAIHKRVVDTEKLMMQYRTHAQNLEVTLAMLQERIEKLESLNDC*
Ga0115659_127772	Ga0115659_1277722	F083260	MTEPYIYESPDGGKTVTRRKFGEMEKETIQTGDVLHHMFDNEPAVSTLTEKEIEKKFKTLRETLKSAHVRANWTQDYTMGKHIRETESLVSQLERDIRIASETA
Ga0115659_127860	Ga0115659_1278601	F023963	ILMATPSNTHQKSIEFDEVNLFSIDKSVYDWFNTKHATNIQGRKVPVLFGGWERFAQMQDNKQDDNLNRMRDPSGMLILPLISIRRGDVTYNTERFVFQQADGAPRVKISERVAMSNFDADRRVPFDGPHMYSTARRRSDAPVMEIATVPYPDFVNVPYTITFWSSYVRHANYFNDRIWQNAYPQDLTYKGYYFYAFIDSGTNENNEENYTDEERIIRSSFTMTVDGYLLKKNDVNVTRTASKMIMSEGYMEEPKMPTPGHKSIDEILTHERARPPHQYPEPMPPGLGKVNYGSLNNSDFGLNKYNQPQQARVGGGKIDYNNPGARSPDSY*
Ga0115659_128045	Ga0115659_1280452	F078824	LKSADDKMLETGLTQNTTVDLLHQATLQLIQEHPKRFEQYVRFFEMGCMYLQNDSEEVPNFE*
Ga0115659_130087	Ga0115659_1300871	F056058	MLFKNIIFATFITAFIIFLYIKTVEANDGPSSIHNITNPQIIVLAEELHNKELAIMVLGGIDYYVQECTSLTSRGTIYRNKIITSHNLNEVLLPINPTYIKGALSVSGYDCHEMYDLIQSLEQGVVEEPEQPVDKESN
Ga0115659_133545	Ga0115659_1335453	F003679	MFKVILKNKFKERKIDLSVAVRVMYKQQFTGSIQKEHIKWWKSYWIKPINLEILYPKKGWITLVKVFREGKPSVRVITRPTSSDKRELLVLKHNYGGNQ*
Ga0115659_134095	Ga0115659_1340951	F083231	LEDFMASKDGKIFDTIVYIGLGVNALTALYLLLMYFEVI*
Ga0115659_134772	Ga0115659_1347722	F000711	ISVDDNHMRIENPLELTTIPRMTEFGLKEDTTLSKWIPFTSDSEFVVTKDKVVVISLATVELAHFYEVVLNKMQTDSKRARPPLTPEDIDRILDIAEEMDSEFMRDDEPHDMIGGHTIESKTFH*
Ga0115659_135842	Ga0115659_1358421	F096030	MLRPNLASLSLSVSDTSTKKPIVIHHHNNLTMGGTEKMCQIFLKHFMKDSTFDHYVAYRKDGDNTREAYFKEIVGPEKMICYESPLELSNTIQIKKPFILHRYSAGIPEFPFVREVKENTRHFVSTAVFGNQDNTIDISKVIYVSKHVQWMANMQGVKNHHVVRNPIEAPYSTENLREELGIPDDAFVFGRI
Ga0115659_136781	Ga0115659_1367811	F022559	RIKDYEADIKYLGEVKKADAADYRQEILRLKGSINKMKQGTTVTDTDMANSGLGDIIMQLIPNKYRKAASFLVPQVEEAVKKDPAIIERVYEKIKSANTASNKQAQSGSEDQTANTL*
Ga0115659_138366	Ga0115659_1383661	F086145	MSMRRIVYKGRAGYLGDIFYIQAGSRGYLKFLACFLIWQKKTTVSL
Ga0115659_141181	Ga0115659_1411812	F049927	VKIAVPTTAKAVGNVDKDFIEVICDPTIPLKKTVIILAVNPKT*
Ga0115659_142740	Ga0115659_1427403	F064080	EFLHFIKHLIGLCGETSHPSLLISGGAFLTTIGLYWKKLISYMKNLEGF*
Ga0115659_143503	Ga0115659_1435031	F043979	MALTISSSDWTNANVRKTLSWQAALVSKLRVYAVKVTFGGSDNYATNGVAADLKEGRISTLVAVIPTFTDSLHKVEYDKTNEKIKLYTVGGSSG