3300008717: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 158479027 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008717
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053046 | Ga0113876
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 158479027 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 132246979
• Sequencing Scaffolds: 12
• Novel Protein Genes: 14
• Associated Families: 13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp.	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae → Cardiobacterium → unclassified Cardiobacterium → Cardiobacterium sp.	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	4
Not Available	3
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas somerae	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022002	Metagenome	216	Y
F041827	Metagenome	159	Y
F042387	Metagenome	158	N
F045567	Metagenome	152	N
F047508	Metagenome	149	N
F054111	Metagenome	140	N
F059076	Metagenome	134	N
F067847	Metagenome	125	N
F070224	Metagenome	123	N
F080165	Metagenome	115	N
F084342	Metagenome	112	N
F097526	Metagenome	104	Y
F101359	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0113876_105596	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga	3769
Ga0113876_111962	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp.	2000
Ga0113876_113712	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae → Cardiobacterium → unclassified Cardiobacterium → Cardiobacterium sp.	1772
Ga0113876_114257	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1711
Ga0113876_115218	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1611
Ga0113876_115567	Not Available	1580
Ga0113876_118772	Not Available	1330
Ga0113876_125068	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1004
Ga0113876_125826	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	975
Ga0113876_126429	Not Available	952
Ga0113876_132488	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	774
Ga0113876_137781	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas somerae	661

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0113876_105596	Ga0113876_1055966	F054111	MNKPLESITHNEFLKLTERLKNLQEFTFLEYIMAPEADIFYFNFMEKTVKIKWDLDYGLFLETESLSTADRDLFLNI
Ga0113876_111962	Ga0113876_1119622	F045567	MVTEDVVHTSTHRVEDALLPVDGDILTPRDGTHIVQTERVVVVLVSQEDSIDTIDTETCGLVVEVRATVNEDTLPTLGDDEGRGAQTTVTSIRAMAHWAATAYLGDTSAGARTETNYLHVSRRESYHGKEIPSLSSERGCVVERVVR*
Ga0113876_113712	Ga0113876_1137121	F097526	MTTDNTTAIAPYTQDGYRRLCERLDDDTVAALLHAHIRAFAADGNRQRLNRLTEAMRIAGEMEKAGRNEHPDPAEQKRRARWDSNLAGLQQQARMAHCEIVNADNAAVSQLTQQCEKNGSCDTAIPSPHDDGYGFTAGLRDIPLNTSQTALLWRIALLTIAEMTDTAPSLVACYLNGTGGEHLGRALVEKTVYPVTVVSNLARLLHEQHKSGQLQRDLR
Ga0113876_114257	Ga0113876_1142571	F042387	RAAVRYGAGLFLVSCSRENDKMTDETLANNAKMQLPTKVTIAENNKVISKRFEYQNDNELKEIIDEGNGDKVVFVYEKNFITSKIRYSQAGEELGKTNYQYSNGKLSSVIDEVVISDSGIQYKRVVTREYHYNGSGVSVNENVKYYSESYAYNLRDENSTHTYVLNGENITKIHHEISKNVPSGHSYLNPNNMVVIDEEVAYDAKNSPYKNIKGFSALATEFCGLDKDENTIADYLNYRWVSHNPTLIQKSINLYGSGADSSEYKFQYEYKNNFPIKTKLNIDNQTITTMVYEYNK*
Ga0113876_115218	Ga0113876_1152182	F101359	LIFKMKKFLSKRSILVGALALVLGFIVSSCSRDKDDDAIYTAKLQVQHHSNNSRNSAANGSVTYRDANGNKRKIYLRSGMSENISFEVNKGFKSFVEVKATDIYGNLFVKWTVTKTYTGARVQNWSTNFTSYTGQGITDSYKETVK*
Ga0113876_115567	Ga0113876_1155672	F070224	MKRLLFLLLTLLHYTAWSQGYNAPDSIYVASGAVYIPPVSGEPIYLLASPLKSGHTPGHKLRTRDWVKVDYSDRNNIIIMGFGNSLVIENLFIYYAAGFPGMKEYELYYKGTGEEIAKEDFDSIKFTRMPTALREIKKYKLPRTRRSSGEVDRWQHPHLFVIEHDKKAGRYYKYRIALVIYMDYNHPEVCIIH*
Ga0113876_118772	Ga0113876_1187721	F022002	MSRRLALTLGLLLALLLSLPSHAQDGRSKVPINRTISGFTLGVTTPAQARAIIQRQGGKIISAEGTQAGSDDGFYAVTGLKYARRSTLSVGLYFYKGHLRRIAFVFNNLDVLEQIESELVDKYGTMAEGVGTSKEKVKGIVDAFTSLEVVRRFEYEGHVGFDHAYIAYTDEELERARSAE
Ga0113876_118772	Ga0113876_1187722	F022002	RQGGKIILEVGIHAGSKDASYIVSGLNYARRPTQTVDMFFYKGHLCSIYFGFDGWDVLEQIESELEDKYGMMIESEGMFKKKGIVDAFTSLEVVRTFEYEGHVRIDHAYIAYTDEELERARSAEKESEI*
Ga0113876_125068	Ga0113876_1250681	F067847	MFSHIVRVKGFFDDEPKAKKLYFHLSRREMFDFIKRYDNVTNFQEWMQSAIDAEDLYTLMEFFDDLIGTSYGERQGEHFVKTPQIKESFLNSPEYEKLFDLFMENPGLVKQFYEGILPEKLLKQVKEDGKFAEVEEK
Ga0113876_125826	Ga0113876_1258261	F041827	LKLSIMKHFLSALALGCLLLSCNRDLENNKNNETPAPPKEERLVLASLYEFGSNVRFQYKNGNEINRMAMDGPHGEASMDFEYDTYGRIVKERRFHHRSDYGETIITYQYDNQSRLTSSHAISTQYYPDTGYTPRCSVEKKHTYTYQGNKVTVKIEMGADTCSAIPETGKEKTITLFVENGKVVKSLDENNQIIETIEYLNPKNTLRNMKGFPALVVEFYIRPFTYKLPFYNGIEHIEDLRFIDNIKTRDFHNGSYWEYRYSYDKRKSHDNDYLEIEEVNIYEKSHNDPTHDNYLSSASPARFYTKEK*
Ga0113876_126429	Ga0113876_1264292	F047508	VEAIATDAVLVVEFVGEPVHIGMLGHRLVEGRVKYPYLRRIGEYLRHSFDTEDVGWVVKRSKLCALMEHIYYLWGDTYALSKALCTVYEAVTNGIDLIEGLYEVLFFKNVEDNLYAACVVRNVKVALNLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELDEGELQGGAATVEDQDFHKVLYYMVRCELILSSP*
Ga0113876_132488	Ga0113876_1324881	F080165	IMKNKKFILGILLSLTACNNKTKTISTLELEKTIINYKDLPSKVKERVFYGEAMKLGEEDEERFQDFQETNNPKKYEYYTKQDPQLAWVHYPYIRNKKTKQEYSIDEDGPMGGRYIIYGDSLYISNHYNIYEEDSLSYTFTRFILK*
Ga0113876_132754	Ga0113876_1327541	F059076	KGKPVLRLVDAPIYSKNVGSAMDADLGGNTATTTNYTDYRPLVVDKVGDVYQGLPINNMSILTLTIDNVNGDYIRKFDTGIDYDKYAVAIMSATFKMPDPSSGKIVMMRAGNGVIPNVDFGGGKYGVTTAPATVLLKQNGSNWGIYADYPNIGPYEFPSGSTSAGQLVNGKWIITLLIGKKEAVNFTELNFNQGGSPEGVGNSNTTYATQLQNFLKTLE*
Ga0113876_137781	Ga0113876_1377811	F084342	GATPPLFAAPRGGAKLFLWGGYLAIPIRRPFFAQALKETLGQERSLGDAYDKDYQNEKALQWIHRRHILGICKEE*