3300008716: Human stool microbial communities from NIH, USA - visit 1, subject 861967750 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008716
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053044 | Ga0113874
• Sample Name: Human stool microbial communities from NIH, USA - visit 1, subject 861967750 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 147811194
• Sequencing Scaffolds: 5
• Novel Protein Genes: 6
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides fragilis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051936	Metagenome	143	N
F055775	Metagenome	138	N
F062845	Metagenome	130	N
F078004	Metagenome	117	N
F084124	Metagenome	112	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0113874_100092	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	128109
Ga0113874_100538	Not Available	43779
Ga0113874_100781	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	31578
Ga0113874_104908	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides fragilis	3909
Ga0113874_106614	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2794

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0113874_100092	Ga0113874_10009259	F084124	LNKQAKALARATKGNTLHFHSQRNALTMFLAFLFIMAVACFNKLSLNTQTAWLFAPDKLLYRTILWALPKPAIFEKIE*
Ga0113874_100538	Ga0113874_10053853	F055775	MAQIAQQDNLVIEVTTTAAALDGDTKKKLIECIEGGTITDVILVTKEVEKKISHARVVSWLVDTTGDSPKYTIDIINANSGAVEAIALN*
Ga0113874_100781	Ga0113874_10078111	F084124	LNITALAFARATKENTLPFHGQRNELTVFLAFPVTMAIACFNHLSFSTQTTTLFAPEELLFMGAAQTRKPLKRLDLNFLII*
Ga0113874_104908	Ga0113874_1049085	F051936	IEQEGTGQVLFFPLALRGKAFGFSVLQKHAVMTPVISIFFEMLIIRYLYIHISIKK*
Ga0113874_106614	Ga0113874_1066142	F062845	MKKTPFILHEKFRSDNNEQRKEWFQKEFERYIIDGLLNAVPSRSCA*
Ga0113874_123808	Ga0113874_1238081	F078004	RRIRSLALLSAVSEHLSSRNTDFLFRDLLFRKSSTGGLSAVAGSAALDIHMIRHTLVIAVINTFYRLTVDTDGMAWMRQGITERLSSLSLLRKALAAGAVTITGMLTSHHDVSLAAQTVLVIGTIFHNTF*