3300008705: Human stool microbial communities from NIH, USA - visit 1, subject 763982056 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008705
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053038 | Ga0113869
• Sample Name: Human stool microbial communities from NIH, USA - visit 1, subject 763982056 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 175420349
• Sequencing Scaffolds: 7
• Novel Protein Genes: 8
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042095	Metagenome	159	N
F062845	Metagenome	130	N
F064725	Metagenome	128	N
F067845	Metagenome	125	N
F088920	Metagenome	109	Y
F089053	Metagenome	109	Y
F092227	Metagenome	107	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0113869_1000047	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	143781
Ga0113869_1001261	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	22420
Ga0113869_1002218	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	12872
Ga0113869_1006763	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3666
Ga0113869_1007104	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	3459
Ga0113869_1009625	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2484
Ga0113869_1009929	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2404

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0113869_1000047	Ga0113869_100004768	F042095	MAKTLYKYEASSSKFVWFTTWDRALRNYYTDDYNYVPDPVVGDPYNTFVEFRSRKPGMANVDWGDGIKEQFPMTKVQGEDNYRIIFRSLAIQHKKNPNTTWWFRKEDGSQYVPVDNHAYADGRRDVQRAVSIDFTCDIHYANIQVCKMTSFPIVDIPGLEFLVVSHTLYVNDGIPVDKLSRSKKLIYIDLQNIGQRMTVIPEAITSKTEVYYLNMFNMLDLRDIESSGIRNIKNMKNLQTLELSSCYLDRYIKEFNDLPKLTSLRIHPGPPDMWNYFDINTLPFFEVDKINPNITNFDFLKDWVSGERRTGWNDDNMSGRGLDHLTGFSVYHSNSIRVDKLPDYIYEMRSIIWFVMDCSTHSQKRSDDFVNSFYDLVVGWDQITMASVAKDGERNQFYGLAVSMYSSQYPDENQRPSGTEQVPEGFVKGSSNGSPATPMEKIYVLKNNYAQRWTIKPE*
Ga0113869_1000047	Ga0113869_100004792	F064725	MTIKGLLAEIKADLHKYDDSGAIDTSSVYRWAEIALKRFGGVIAIMSEAVVKTNNRQAVLPSDFFDMLDAYRCEPLVCEIPGGDKAKADLQHEIGWVERTERGFRWNSCTECCKEEFEKTITEKIYIGSYEVRFHYHHPVRLSIGRGLRRDCAADKYRDKYAWDNYDITISGNTMYTGFDGFIYIVYRATPKDEDGLPYIPETDLGYLEDYVETYIKMKIFENAAVNGLIQGAGEAYKLYAQQEPGKFARAMKELKMSMITLNDYRELAEDNRRRMMSYERMWPNAFDKYVKTV*
Ga0113869_1001261	Ga0113869_10012618	F092227	MKEEKRKRILRVGCLILAGIFALSVLGSVVMMLLV*
Ga0113869_1002218	Ga0113869_10022186	F089053	MEGPRPDKFAFGVRIGRVVDECRPAKGCIRKRIHGSANGQPELSTAEEVNVKNMEAFL*
Ga0113869_1006763	Ga0113869_10067633	F088920	VSANLHHYPAFWAGLILHLILHFSQKAAIFAPKRAVLPIFVPTLFFAGLSVFSPQTSPKISGQTSLYQPWLSPYCLFKD*
Ga0113869_1007104	Ga0113869_10071042	F092227	MNEQKRKRILRVGCLILAGVFLLSVMGSVILMLLV*
Ga0113869_1009625	Ga0113869_10096253	F067845	VNTGTDAEKAAELAQQLGVAHTQELDNTAKAVAEWFVQEPDSLRVSGLDLVYTVALDADNNMSHTDDLNAFLYWSGCYGVPDDVTVALLLDDSAAMTARLYAPQADSAAAELLEDAAGHSELGAAFIDYNGTAYVVAVFR*
Ga0113869_1009929	Ga0113869_10099292	F062845	MEKTPFILHEKFRSDNNEQRKKQFQKRFEQYIVDELSNTVPSKSCA*