3300008693: Planktonic microbial communities from coastal waters of California, USA - Canon-50

Overview

Basic Information

• IMG/M Taxon OID: 3300008693
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117987 | Gp0126532 | Ga0103943
• Sample Name: Planktonic microbial communities from coastal waters of California, USA - Canon-50
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Hawaii
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 3690756
• Sequencing Scaffolds: 14
• Novel Protein Genes: 18
• Associated Families: 17

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar	2
Not Available	8
All Organisms → cellular organisms → Bacteria	2
All Organisms → Viruses → environmental samples → uncultured marine virus	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Planktonic Microbial Communities From Coastal Waters Of California, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Coastal → Unclassified → Coastal Water → Planktonic Microbial Communities From Coastal Waters Of California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal water body → coastal sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Pacific Ocean
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000237	Metagenome / Metatranscriptome	1498	Y
F001521	Metagenome / Metatranscriptome	679	Y
F001608	Metatranscriptome	663	Y
F004235	Metagenome / Metatranscriptome	447	Y
F010768	Metagenome / Metatranscriptome	299	Y
F019484	Metagenome / Metatranscriptome	229	Y
F031514	Metagenome / Metatranscriptome	182	Y
F037051	Metagenome / Metatranscriptome	168	Y
F039167	Metagenome / Metatranscriptome	164	N
F045157	Metagenome / Metatranscriptome	153	Y
F059997	Metagenome / Metatranscriptome	133	N
F065844	Metagenome / Metatranscriptome	127	N
F090440	Metagenome / Metatranscriptome	108	N
F093978	Metagenome / Metatranscriptome	106	N
F099434	Metagenome / Metatranscriptome	103	Y
F100952	Metagenome / Metatranscriptome	102	Y
F101265	Metagenome / Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0103943_10294	All Organisms → cellular organisms → Eukaryota → Sar	1089
Ga0103943_10376	Not Available	1006
Ga0103943_10419	Not Available	978
Ga0103943_10771	Not Available	816
Ga0103943_10859	All Organisms → cellular organisms → Bacteria	791
Ga0103943_11225	All Organisms → cellular organisms → Eukaryota → Sar	716
Ga0103943_11906	Not Available	612
Ga0103943_11965	All Organisms → Viruses → environmental samples → uncultured marine virus	605
Ga0103943_12343	All Organisms → cellular organisms → Bacteria	573
Ga0103943_12408	Not Available	567
Ga0103943_12488	Not Available	561
Ga0103943_12502	Not Available	560
Ga0103943_12729	Not Available	545
Ga0103943_13232	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	513

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103943_10294	Ga0103943_102941	F010768	MKEVLNGGYNVHPVPPPNSEIKERIAKKYERKKTKIEKLFTLGYTTSGGP
Ga0103943_10376	Ga0103943_103761	F019484	FYFLTILGGSLKKIAKKITTNVPISRKVYTNASII*
Ga0103943_10419	Ga0103943_104192	F039167	MPSTNGTISEVIVGTGVLYVAQIANDGNASGDYVAFPADNGSGAWAAMASGWVDVGYSEHGCTLEGKLAQACMSILLIALGGSTFTSCDCVNYSSDYASLIPPSTDDFDEKSLLLKVDGPAGADRHVEIPRAINVGAFSMAHQKAPQKVVIATEFKVLLPKAVSQHTDLFRIVDNKNDTDVFDIN*
Ga0103943_10572	Ga0103943_105721	F000237	TLTIVANIF*SLFNNIYKTYYIISTNKHLNTDQLTRLMILHYFVP*YYLYLVKLHVLFCHES*DSDSGENVYEDKSGSYVS*FYDAFLKEIQDA*Y*TLYIFVYFFIHHFDASTVNYHFFER*NISELDEIRFYGVAPH*YFRPLMGLLVVSPSHYEGLM*MGLWFVLLASLPIIYNLYNSNNSYLPVIPMQSSMLQTLCFILFMLSMYCTASMLPCGRYYYAPEGGYVGNP*VKFSYQYAYLYMA*VLHHLDLVEHYGFQYVQHLMRRHSNFKLYAQARQLPR*SSNSYLSRFSKS
Ga0103943_10594	Ga0103943_105941	F000237	DG*MLGGYAFLWFHYIIFLGISLSCTHLSDLTLTIVANIF*SLSNNIYKTYYIMFTNKHLNTDQLTRFMVLHYFVP*YYLYLVKMHVFFCHES*DSDSGEATYEDKTGTYVS*FYDAMLKEFQDG*Y*VMYIFIYFSLHHFNGGTVNYFFFER*NISEVDEIRFYGVAPH*YFRPLMGMLTVCPTHYEGVF*VFLYLFSLAGLPMYNNFFNSMTKHHPAIPMQNSLLQTFCFIMFMMSIYCTASILPCGRYYYEPEGGYVGNPLIKFSYQFIYLYLI*LVHHLDAIDHYIFQFS
Ga0103943_10771	Ga0103943_107711	F065844	DRDDQWYYENVDYNFVGPDKKSWLYFIVKDDNIVKCGESGNPLLLETKGKNPRWKKGTFSRLGRYINGCTTDTVIREELYSAVKKGKVSVWAKQLPVTTVTVNEMGEEKIVERSIHKDLKMVYFNI*
Ga0103943_10859	Ga0103943_108592	F045157	EEVRNKIKTLRKTGHIRDAQSAIADMINLKSQQRK*
Ga0103943_11225	Ga0103943_112251	F037051	PQAEGSAAVQLIEAAKNKLNKFYNPTMYKAPERRELTEEERIAVANGAVDPRDAEEAAAAGQGIAGTGITVFAQVRAASDAAPPPPPETFGAYTKKSGKSNGVIKLMDMMIGDVKTDLTDGEHAEEMAQKDYENLMAASQKTRATNAESITEKESAKSEWTEKIENAKTEHASTTEALAKLAEYIAGLHASFA*
Ga0103943_11906	Ga0103943_119061	F004235	PNRTVTALIGEQDFIGKAITMIAVDWDVDADASREAMEAVSNTILSRATILAAGAVYDTGTKQDFLLEGDFTSTINDFTSLDGTLAQVLVEDIINLGTVDSINFGSGTVAVTIKTTFKYA
Ga0103943_11906	Ga0103943_119062	F099434	MPATKNNFSHITNVELEGVATSSFTVDFINTMASETSDLSSGSATAGLEATRAVIGSYINILSEGPLHE
Ga0103943_11965	Ga0103943_119651	F093978	DEPLMKEAISYLKTRYKEEIFNTSYKDHDQRQVLWMAYNMVDKIKGHLESVMNEGKLASKELDQLQDLTK*
Ga0103943_12343	Ga0103943_123432	F001521	MLAMNKLWITEYIDAHEGIAIGPYIKADTIAQASRIAIQYGLLVLGEIQELEHDDQIKKRIVH*
Ga0103943_12408	Ga0103943_124081	F001608	KDFKDSAAAVAKAIDVLNEYYSSAAFVQVAAKQPDASFGGAKGDVGSTIVSVLEVAESDFTSLLAESEADESAAQEAYDKLTQENAVTKATKTGDIKAKTSEVKQIEVALGNYKENKATVTEELDAVLLYLDKLKPQCETKVMSYAERKSRRESEISGLKEALEILEG*
Ga0103943_12488	Ga0103943_124881	F090440	SLGGNEISGLKLATGLGLKRVYHCRITDVGEDDDLRIIIRKSIGG*
Ga0103943_12502	Ga0103943_125022	F031514	MDVTGGVDAENRNIVYADEYPEEPKKGELNKDFGLYVERPFYIVSKLSSHRYLDMINNKDFVIKTPNGRNTQVWFFDQKSYTIKTQYNKKSWDITSSGKTNKM*
Ga0103943_12729	Ga0103943_127292	F101265	SLGGNKISGLKLATDLRLKRTYHCRITDVGEDYDLRIIISKSIGVYIVKTTSSEIVEAN*
Ga0103943_12887	Ga0103943_128871	F100952	RHRGAKQNQRVNPLADNYTGQQISSRFVQPGVMVLNKENTQFMLPWIEKYKDIKDDRIDDGMFLNSCIVDSDVPLLDMDKKFNHKNNGEQFDYNNVYFLHCAGGKKHKRQVKIWDKLKKIYPEVNPDLSGLIQ*
Ga0103943_13232	Ga0103943_132321	F059997	AKSVLNTIDSFIDRAKELTSLRLEKGKMLSKSAQDSLMQIQDRIQEVYNDLDSILGLGAEQEEAKQPSDELDKLWLTTQEVLAQSQGITIEGEKE*