3300008676: Human stool microbial communities from NIH, USA - visit number 3 of subject 159753524 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008676
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053015 | Ga0111520
• Sample Name: Human stool microbial communities from NIH, USA - visit number 3 of subject 159753524 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 114039564
• Sequencing Scaffolds: 7
• Novel Protein Genes: 8
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides thetaiotaomicron	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus	1
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042936	Metagenome	157	N
F051936	Metagenome	143	N
F078004	Metagenome	117	N
F078822	Metagenome	116	N
F088920	Metagenome	109	Y
F092228	Metagenome	107	N
F097493	Metagenome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0111520_100133	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides thetaiotaomicron	118059
Ga0111520_100517	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	43582
Ga0111520_102881	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	4044
Ga0111520_103461	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides thetaiotaomicron	3299
Ga0111520_106056	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus	1829
Ga0111520_108992	Not Available	1268
Ga0111520_116874	Not Available	690

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0111520_100133	Ga0111520_10013372	F051936	FPLALRGKAFGFSVLQEHAVMTPVISIFFATLIIKYLSIHISIKK*
Ga0111520_100517	Ga0111520_10051742	F097493	MKNGTAYFYEHGVEIDGTVYGIHTDRDILRIKRRIVNDKFAETDDNFDMGVEIAKIQHTDITFEQPTAEQLEQIQAKTYNSMTELKQHVQSVMNGDETMSQDEINAMLMLQIAELKAGVGGE*
Ga0111520_102881	Ga0111520_1028813	F088920	VSANLHHYPAFWAGLILHLILHFSQKVAIFVPKRAISLLFVPKLFFAGLSVLFPQTSPKISGQPSLYQPWLSPYCLFKD*
Ga0111520_103461	Ga0111520_1034611	F051936	QEGTGQVLFFPLALRGKAFGFSVLQKHAVMTSVISIFFATLIIRYLSIHISIKK*
Ga0111520_106056	Ga0111520_1060563	F092228	TLAAADYRKTKVTAYDSKNNSTVNLPSNGCLINDNLFYINGNKLCCLDTTTNTRKTIDTDCRSFVCNNEVIAYTKNDSVILKNSDTLENIGDIKFDNQIYYINISDGNLYIAERIFEDKTDEYGYSFKVGKQYIFKKYDLKSCKLLKSKNANYVNGIRYVTVCQDTFYFFCDETQTVNNVCLDKDVNYPTIQHPDVKFITSNNDCVYYISEKTESAIILKTVESPYNGIWKLEVGSNKPVKIADRCDCDELLATKNFLYCYTINYILPRGMANSWVKGYLIDQLAIS*
Ga0111520_108992	Ga0111520_1089922	F078822	IFLSFPNAFLKAFHPHAVRFPAAFLLVHRFYLAFEELLSCATAYL*
Ga0111520_115048	Ga0111520_1150481	F078004	LQGFVKPDLMVLFPVCFLFFCKSSTGRLSAVAGTAALDVHMLRHTLIITIINALYCLTVDADRMAWMRQGIAERFSSLSLLRKAFTAGSVTVAGVLATHHDVSLATQTVLI
Ga0111520_116874	Ga0111520_1168741	F042936	LLRQGPFCCVRLMGRGGGKGRVWKTKEGIMKTSGIVDRGEDTIRNFEKVEQEGALTPPYLGKAHFRSRLRGKG*