3300008643: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 706846339 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008643
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052995 | Ga0111423
• Sample Name: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 706846339 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 69592786
• Sequencing Scaffolds: 7
• Novel Protein Genes: 10
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2
Not Available	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp.	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Euarchontoglires → Primates → Haplorrhini → Simiiformes → Catarrhini → Hominoidea → Hominidae → Homininae → Pan	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027205	Metagenome	195	N
F053092	Metagenome	141	N
F054109	Metagenome	140	N
F067847	Metagenome	125	N
F071329	Metagenome	122	N
F077781	Metagenome / Metatranscriptome	117	N
F081456	Metagenome	114	N
F098763	Metagenome	103	N
F099454	Metagenome	103	N
F103434	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0111423_100049	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	43871
Ga0111423_100156	Not Available	18199
Ga0111423_100440	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	9962
Ga0111423_105434	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp.	1993
Ga0111423_114390	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1001
Ga0111423_126411	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Euarchontoglires → Primates → Haplorrhini → Simiiformes → Catarrhini → Hominoidea → Hominidae → Homininae → Pan	622
Ga0111423_130793	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	544

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0111423_100049	Ga0111423_10004932	F027205	MRAVKESEEFERKALVEAQKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFVVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRTRK*
Ga0111423_100049	Ga0111423_10004937	F071329	MRPLYSKGILMLPVAKIIISGLSSIGAGMIASKLTKPIVSNSSGIAKILLWFGSVGTGIAASAIVAREVELQFDAAIKAVEEARDHIEIED*
Ga0111423_100049	Ga0111423_10004945	F067847	MFSHIVRVKGFFDDEPKAKKLYFHLSRREMFDFIKRYDNVTNFQEWMQSAIDAEDLYTLMEFFDDLIGTSYGERQGEHFVKTPQIKESFLNSPEYEKLFDLFMENPGLVKQFYEGILPEKLLKQVKEDSKFGEVEEQIKKAELNSL*
Ga0111423_100049	Ga0111423_10004949	F081456	MFKEPPIYYILISLIFLIVFGAISFATWLVWLTNVAFFVKLVITAIGFLFAAFTVILYTISAE*
Ga0111423_100156	Ga0111423_1001565	F054109	MVGRPKSKKGVKVHTAFKIYPSDKERVQAMADKLGMSLSAYINKAVLEKVERDEKSEA*
Ga0111423_100440	Ga0111423_1004402	F103434	MVGRRPRRGRFLEDGPHAVEVTVAVVKEGRTGRRYERGETFYVDKVLVQPSAGNALKATENRDIRGDLTDETTLKVMGTGRKWPGGPHSWVKVLRGPASLEGKTFQQAGEPLTYDASPMTRHWAVRCDTLGTVAK*
Ga0111423_105434	Ga0111423_1054343	F053092	EMEDTMDDHTVQLFGILVAKELGIATHRIEADEHVPRDHIPLTLVEGDDIGIVVMIEKVLIGLQDALITTELVAELADTTVIASSDLTDPVAKDTLSEARLLDVFVSIVSYKLRFFRHK*
Ga0111423_114390	Ga0111423_1143901	F098763	ASGARARDRRASLRILSPALYLATKLFKAVVRTMISYDPSDEVEGKGGMNAIPTAVDE*
Ga0111423_126411	Ga0111423_1264111	F077781	LRPTFCSATGTPPPIAAPARPAPAHLKAPAAVTGGWGSPRQNDFFILLTLESPAPCDPLQTESHLVFRTRIHSQVQWGDVRGVAGRTKDSLPSDSVCTVGPRAGDLSVRTADSLYLGFPRPHPGTPGLGRFLPFLALQSLSETPSHARMPRVTVARTSPETLEISPLRAAT*
Ga0111423_130793	Ga0111423_1307931	F099454	MKASKLLWAVIMAFTFVFTSCDPFSQNEPTLEDRGYKYFDSTAQRKSFRVVTASGKSYNHKVDWHIIGILDQNSGTYLTKKVDTLSNGDLKISYDWISFTVREKKSVIDVEVQKNETGQDRSVFFETKNDYKRTTSP