3300008640: Human stool microbial communities from NIH, USA - visit 2, subject 763901136 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008640
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052994 | Ga0111422
• Sample Name: Human stool microbial communities from NIH, USA - visit 2, subject 763901136 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 141074577
• Sequencing Scaffolds: 9
• Novel Protein Genes: 10
• Associated Families: 10

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	4
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → unclassified Lachnospiraceae → [Eubacterium] rectale	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013656	Metagenome	269	Y
F026592	Metagenome / Metatranscriptome	197	Y
F044554	Metagenome	154	N
F047755	Metagenome	149	Y
F055715	Metagenome	138	N
F071325	Metagenome	122	N
F076189	Metagenome	118	N
F076190	Metagenome	118	Y
F078004	Metagenome	117	N
F082887	Metagenome / Metatranscriptome	113	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0111422_100020	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	210225
Ga0111422_100193	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	71663
Ga0111422_103398	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	6468
Ga0111422_103613	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	6044
Ga0111422_104696	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → unclassified Lachnospiraceae → [Eubacterium] rectale	4535
Ga0111422_106312	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3324
Ga0111422_111297	Not Available	1813
Ga0111422_114925	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1368
Ga0111422_126872	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	732

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0111422_100020	Ga0111422_100020224	F082887	MEKLKTIAKYLTNILAIVSALVAGINAVDGITIPYAIQIVQVIAVVQGVIGTYLLGQKAISNKEE*
Ga0111422_100170	Ga0111422_10017018	F078004	MVLFPVCFLFFCKSSTGGLSAVAGSAALDVHMLRHTLIITIINALYCLTVDADRMAWMRQGIAERFSSLSLLRKAFTAGSVTVAGVLATHHDVSLATQTVLIIGTIFHNAF*
Ga0111422_100193	Ga0111422_10019343	F047755	MEQEKVKYLIDMINNMDIKDKLRLAICMSQSKWSGLIYNTKGYYEKFDSMLKDIDEEYRTTLINFGKYKLVVFAMAKLMEMETTEQNKIALYLFNNIN*
Ga0111422_103398	Ga0111422_1033986	F071325	FKVLLALLSDSSIIISKVVLFVKHFFDIFLSFPNAFSKAFHPYAVRFPAAFLLVHRFYLAFEELLSCVTAYL*
Ga0111422_103613	Ga0111422_1036135	F055715	LTKANEFDKINELLIERTAEKFERASKNKLKKFLTNEKFCDKINELIRVGTAKILDN*
Ga0111422_104696	Ga0111422_1046966	F013656	METTINVLYKEKKLAIYTNKVDLQKQLNKLIGKPIKEYKIKRSIGGSLWEIALDDKIKIQKVIVKANIYEL*
Ga0111422_106312	Ga0111422_1063121	F076190	ARNGGWNGRSSWVTTAGGSITISVKNVFTAASRVSGRVWSLVRITVPNGLKSVRIWVEKTQNNSLYPYFQREPL*
Ga0111422_111297	Ga0111422_1112971	F044554	RFIPVLCASIARLFPCRTEIARCLTLDFAISRYLFLSFSFSFRTNFAQALFSSLLFASDTRAKSILFLLFENEIAHLQGQYRFNSHRYCFSAFLVL*
Ga0111422_114925	Ga0111422_1149252	F076189	MRINHFKIMQCPAGCVICRALFFYFLSPFIKPLLYVEKLQIGTVLPVVPDLYREFSEISACFDLCAIQSAQKQLNMLCNFHENTLGLLIFYTNYAII*
Ga0111422_126872	Ga0111422_1268721	F026592	LRTASPQGIAALAAQGGVATLTERSDETCSVEQFSSADRE*