3300008628: Human palatine tonsils microbial communities from NIH, USA - visit 1, subject 763496533 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008628
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052987 | Ga0111366
• Sample Name: Human palatine tonsils microbial communities from NIH, USA - visit 1, subject 763496533 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 84641554
• Sequencing Scaffolds: 7
• Novel Protein Genes: 7
• Associated Families: 7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	2
All Organisms → Viruses → Predicted Viral	1
Not Available	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Palatine Tonsils → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040685	Metagenome	161	N
F041827	Metagenome	159	Y
F061926	Metagenome	131	N
F077405	Metagenome	117	N
F081454	Metagenome	114	N
F081510	Metagenome	114	N
F097490	Metagenome	104	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0111366_101037	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	10598
Ga0111366_101415	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	7843
Ga0111366_103092	All Organisms → Viruses → Predicted Viral	3576
Ga0111366_103672	Not Available	3015
Ga0111366_104525	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	2431
Ga0111366_112127	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1011
Ga0111366_115551	Not Available	835

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0111366_101037	Ga0111366_1010375	F061926	MMIKTAKHIKTFLASVLLLIFVMNVSGLFVQLHHQETHQKTEKIAECSNKVCYHKAHLQTKSDCDCGFLCTLNYFYILPEKPLTEFHVNEYFSYFSSYKIFVSERIILLWQSRAPPVLS*
Ga0111366_101415	Ga0111366_1014151	F040685	QTAFIMKKLLFKLFFTLAFASISLHGQEKIQQVEVHIFGGMALYSSQYTLNSLKKEFSAKPLMGQKEELPKEISLPNTPKNWEAFTKKINLDKFKKLRDGPSQQAFDGQDEVIIIKTDKKTYRKMNASGNDHDRKVWYDLLQIIAKEFGKKSIYE*
Ga0111366_103092	Ga0111366_1030924	F081510	EGIKSGKKIEATKAKYEEMDAAGEEYTRMDVVKDVAKDVAIPVAVATASTASIILGFAIQTNRLKAVSSALALVTEEHARYRLRAKTVLDEETFKKVDAPLETKTVNVNGEDIEVESIVPNEGDFYGMWFKHSRKYASDSPEYNEGVIKEADNVFTEKMMRSGMLTFAEVLDTLGFEVPKAALPFGWTDTDGFYIEWDTHEVWNDDKQEYEVQFYVRWKTPRNLYATTSIKDFIPKKTRKELN*
Ga0111366_103672	Ga0111366_1036724	F081454	MKVFKLVLLLFITSASLVFGQEKRYFFKHEFQPNSKYLIKYKTDMDGGYKFVGSKEVIDKIGMDGVKMTINSDIESAISTQKKQGNNVPFILEYTKYFYKAEINGETVNRKIPLQGVKLIGDIVNGKKMEVKNVEGNIDENTKKILIESIKQFSAIDTDFPKEGLKIGDSFDVVVPYKQSTQMGDIEMIMNIKYTLLKVEKEEAYFDMLIDFVMGDKNVKNMDLSASGDGKGFLLFDMKNNYFTSQNIDMTINLKLK
Ga0111366_104525	Ga0111366_1045252	F097490	MELDENKKEVLVEIRNNTENNYYLLSPIVSIMTKHLQDIEGEMIEGQIHHKKLDSIVCSVCIWDDICKEEYYAMREIVLLPKKSVKKIKYKYDNEEYIEIETVHIGFPYNGYYNEIGKKMQFMLKKKLDSSNIIKGYEFYNKDIETMTIKM*
Ga0111366_112127	Ga0111366_1121271	F041827	MKHFLSALALGCLLLSCNRDLENNENNETPAPPKEERLVLASLFEYISNVRFQYKNGNEINRMTINEASIDFEYDTYGRIVKERRFDHKSDYGETIITYQYDNQSRLTSSHAISTQYYPDTGYTPRCSVEKKHTYTYQGNKVTVKIEMGTDTCSAIPETGKEKTITLFVENGKVVKSLDENNQIIETIEYLNTKNTLRNMKGFPPLVVEFYIRPLTYELPFYNDIEHIEDLRFIDNIKTRDFHDGDYWEYRYSYDKENTYNGDYPNGVGIHARVHNDPTYDEYLYEISADRSYIKEE*
Ga0111366_115551	Ga0111366_1155512	F077405	PRLLVAKQRGVFYGFISLCQIKFVKKVFDWLKIIQKQKVRLK*