3300008626: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 764487809 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008626
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052986 | Ga0111364
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 764487809 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 103880820
• Sequencing Scaffolds: 8
• Novel Protein Genes: 9
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041827	Metagenome	159	Y
F046432	Metagenome	151	Y
F067846	Metagenome	125	Y
F073671	Metagenome	120	N
F080166	Metagenome	115	N
F089057	Metagenome	109	N
F092230	Metagenome	107	N
F092232	Metagenome	107	N
F095629	Metagenome	105	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0111364_100202	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae	43137
Ga0111364_100546	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	22641
Ga0111364_101371	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	12206
Ga0111364_101680	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae	10394
Ga0111364_104956	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	4024
Ga0111364_105191	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Negativicutes	3822
Ga0111364_106497	All Organisms → Viruses → Predicted Viral	2961
Ga0111364_111000	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1563

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0111364_100202	Ga0111364_10020250	F067846	MESIQAQWERKTFNDYDRQCSKEDDYNRAVEMEIESIKEDISNCDSDTLCAFSEKMFDDDEFLKAVALGTDYEEMRIKILTAMAEDRLEQLEEDYRKGYILND*
Ga0111364_100202	Ga0111364_10020255	F073671	MNKETEHELAELHEKERGLEKALELVREKIRELVNYTDKNKV*
Ga0111364_100546	Ga0111364_1005469	F080166	VNILANFENYTKVVEQIFELNYQLTLKMEVTFNNIIKRINTEIKENFHTEYVVGANKLTTNLRYRYRMRLSPRGETVGVIIDWDNYDDLCNIIDEAIDICDPDNKTSPFKRMYSTAGDLLDIKCDSLKVRYLHLEDRFGDRLDLMPFVLIDDHNGTLTEAMKFRFNNDLIFDVPVSRLKGFRRFLMTYNPLLHAGSMARYMAITPLLGNNRQNMMRS*
Ga0111364_101371	Ga0111364_10137115	F092232	MNTQAKFIADYNDKNRPKFNDKFFTKSDDDIIEDLKDVILSCERNKFYTIKVLGFEVIDDYTEVQKLLIGDETPSISIKDSDLKILKVTYHVACTKDEDTFDVLIAIPRVIDGAYIHLNGNDYFPLFQLVDGSTYNNTTAAAAKTQSITLKTNSNAVKMLRNFVDLNTTKEKTLRMAMFSVYLFDHKVTLFEYYLARFGWYETLSKFNFEDIIKISDHDIDDPEYYTFAIANAHMKNPFYISAVKSFVDNDRILQSFIASFAKAISLYATKKTTLDQIYTTEFWVCKLGYNFVSSETSVFTKGNAIIESLENSYDIPTKKRLRLPDHIKEDIYSVLKWMACEFSSIRLKNNLDASSKRIRWSEYIAAMYIMLINVKLRRLPEKHDPNMEAYRIKQQLNTPPMALIAELQKSNLKGFRNMVNDRDSFLQLKYTIKGPSGPGESNSKNVARNVRAIDPSHLGIIDLNTSSASDPGVGGMLCPLNYGVYEWNSFTNEEEPNVWDDNFSKMLNIYREEKGYTSAIMLADDAGLELTDTRDPEAVAFDANLLGQTIAKVARTRAFEKQLRPALINMEDSCSIYFEEV*
Ga0111364_101680	Ga0111364_1016805	F092230	MRQAHKRMVDKLKTHLLKVFLPLFIVCIILVAFFRQIGCGSDGEYAFQISEWGAKLKNIYGTDFINKEIIVRDNAVRVDGIRCLYAVNQNEDGLSIYLLLPGGDYLTHNYVGSSFVRFSNSSEYINMAYGEGSVEVSDSTSTGEAQNTEEKEARDKVDEAINSMRHLFASAIMVNLRVVELYKILTVCMILIVIAMTIGYYSYLKPETVYEFYCKLRRKEKYPSDVNLVKRIGFLVIILPPCMLFLLIV*
Ga0111364_104956	Ga0111364_1049564	F041827	MKHFLSALALGCLLLSCNRDLENNENNETPAPPKEERLVLASLYEFGSNVRFQYKNGNEINRMTIDGPHREASMDFEYDTYGRIVKERRFDHKSDYGETNITYQYDSQGRLVSSHAISTEYEEYPGSGLPPKTNPLCSVERKHTYTYQGNKVTVKIEMGADTCSAIPETGKEKTITLFVENGRVVKSFDENNQIIETIEYHNTKNALRNIKGFPALVAEFYVREYTYELKWYNVIESAYDFRFIDNVKTRNYPSGNYTLYKYKDDKGNSYDGDYPTDIFIFDKSHNDPTLSDHLWYLNASRYYIKEE*
Ga0111364_105191	Ga0111364_1051915	F089057	MTNIIPLIAKKYNRKGDTSGTLKSLVDDLVFIEDVDDSLLFITNIPRETKYSIEEVFNIISSNDKYSEVLGNVLSSLNIDLDYHKLLLNAIDSESYKIISLISDNIPTPDLFLSKNNYGCLTTALGKSYTIFDKVLGMVISQLLHTSSKEDKILSLFMTICIINKDIDKLASLCTGYLAIIKDEVL
Ga0111364_106497	Ga0111364_1064973	F095629	MEAKTMRELIICACLLGCFGVAQAAAPVDQPKEVKVVHNDDNVALHKKVYKLEQRIERLEKLLAEKEGK*
Ga0111364_111000	Ga0111364_1110002	F046432	MWEMTENELSGIISKYQMTEGRYSLEEEGSFGESEFFWVFKNQLTNQKYLLVNTYSHHGVEAELEYYREEGFDNLEAIPRRIETLEIASYADDEISKYLFGMYSLFEIKS*