3300008622: Human stool microbial communities from NIH, USA - visit 1, subject 765640925 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008622
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052983 | Ga0111363
• Sample Name: Human stool microbial communities from NIH, USA - visit 1, subject 765640925 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 152622707
• Sequencing Scaffolds: 14
• Novel Protein Genes: 23
• Associated Families: 23

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae	1
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus → Bacillus subtilis group → Bacillus atrophaeus	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2
All Organisms → cellular organisms → Bacteria	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026489	Metagenome	197	N
F032286	Metagenome / Metatranscriptome	180	Y
F042095	Metagenome	159	N
F044554	Metagenome	154	N
F047126	Metagenome	150	N
F055715	Metagenome	138	N
F058555	Metagenome	135	N
F064725	Metagenome	128	N
F066905	Metagenome	126	Y
F067844	Metagenome	125	N
F072366	Metagenome	121	N
F074964	Metagenome	119	N
F076189	Metagenome	118	N
F076190	Metagenome	118	Y
F077313	Metagenome	117	N
F078004	Metagenome	117	N
F078005	Metagenome	117	N
F083451	Metagenome	113	N
F087334	Metagenome	110	N
F089592	Metagenome	109	N
F090484	Metagenome	108	N
F093883	Metagenome	106	N
F098313	Metagenome	104	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0111363_100034	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	149605
Ga0111363_100040	Not Available	139711
Ga0111363_102459	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	9587
Ga0111363_102515	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	9311
Ga0111363_103459	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile	6497
Ga0111363_106073	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	3424
Ga0111363_107552	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	2682
Ga0111363_107727	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Bacillaceae → Bacillus → Bacillus subtilis group → Bacillus atrophaeus	2624
Ga0111363_107888	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2566
Ga0111363_109604	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2067
Ga0111363_114397	All Organisms → cellular organisms → Bacteria	1359
Ga0111363_128026	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	708
Ga0111363_132789	All Organisms → cellular organisms → Bacteria	615
Ga0111363_134647	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	585

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0111363_100034	Ga0111363_100034100	F098313	MREKKFDFVIYPLDLIITVGLDYKTLCDRFENMEPEHNGEWGNKEDMNKEASFVNLVKDRDDDGRFAILWNFSSDDDITIKNTCHESFHVAMSVCQFCNMSLGFKVGEDEHAAYIAGFAGGCAYDFLYSNSTE*
Ga0111363_100034	Ga0111363_100034136	F083451	MDRNEREKQVLDLLMSRKDIRKLVEKSNECYSKMDFVGAMKYRQEIKDIVDRESKIMLTKSESLVSLMNNADNEYKFNMLVWLHSMMCMADVFNGILEDFKDGVRKANGNSKFVKFDNLDRLMTECKKEIDYLMKGTSKSFQISFAVRSDELREMIENMVGDNIREGYDIFKEEAEMVNETDRSKIEEFNKKLDHD*
Ga0111363_100034	Ga0111363_100034155	F078005	MKKSEFVKELEKIIDMVKTEDDGFEYGGKVIFYKEDDSNYEVSVMNIEMNLEVEADVMAGMDDIDFTCLMSEVYKQKAIKAIMMEKDDDEDN*
Ga0111363_100034	Ga0111363_10003425	F058555	MSGTKIALLQKMKSNFDKILTEAYIPKDIQAKKDELGCLRLPAGSLVCPVDYKPVTNKDGKKVTAVKYSNKKDNIRGSGMVIEKKCKQVTAYLSIINVQKHVFLRNRMRDGYRDRIEINTDDFIDILSDGIAYFCYRHVIENCHEDIDYQLKTLKAYAEGEIRIALSDIMIYSYKAKKNEDTKEIFVGKKRSVYKCLNKNLSSDERRNMANKSRKLDRVRILSKIIFRARTRNVHHIYKVTKRKTVKFNVAYLLNELNKKLIGIGMREISQSTIYRYISMFLDMCKKNISDLYDEVKKYNGIANTKDRKNVTIGCLRLLYKGKYMHILISTEYIKDVFLGEKSYEMSKAG*
Ga0111363_100034	Ga0111363_10003430	F093883	MEEDKDIKKEIRDYLKEEADTHIRHWLAIKRESKRLYSEIEDRTKKIALKSSSLIKEENFVSLHEMTHKIQMLNIEAVKVNSRLMFIIQLATSFGMDLDLDTTYASTAKSIIEDRTSGFVFYDDKERLRYADKELEDMFHDMSVTEVSKIGVVQSYELLMKQYNEFKDMKANATGKTKVDE*
Ga0111363_100034	Ga0111363_10003437	F089592	MKEILKSRKVLAEVNGFNIMSDTLYEVVGKHDGSAPQAFQDANIAKAPFPENATHVCCPWDDFSKAYNTGFYPRSRCYNGLDKNEIDRLVKQRVDNIMKPFEEMSQMDLSQTNLEFWDDAKDKIFMGKVYNTANTVDLFYLYLAVFSGMLTPQEMDGDPVFMNSMFCFVEKDNMKDFVQQREINKMNISYKFISALKKGGDDRQAVIDLLLYIGIVTRPDFTEDEYYTGSLSNWMNEKKTNVDYLLDIWDRSLKGDFKEVLEFYRIVNVLQRNGRINMTPSGLQYNGQIIGHDVRTSAEFLATKKDFINIKANVLDEYEEIISMSNIDDKSKTKKVKDIKKKDDVEEGDKVKEE*
Ga0111363_100034	Ga0111363_10003445	F042095	MAKTLYKYEASSNKFVWFTTWDRALRNYYTDDYNYVPDPVVNNPFNTFVEFRSRKPGMANVDWGDGIKEQFPMTKVQGQDNYRIIFRSLAIQHRKNPNTTWWFRKEDGSQYVPVDNHAYADGRRDVQRAVSIDFTCDIYYANIQTCKMTAFPIIDIPDLELLVVSHTMYVNDGIPADKLSRSNKLIYIDLSNVGQRMTEMPEAITSKTEVYYLGMFNILDLRDIESSGIRNIKNMKNLQTLELSSCYLDRYIKEFNDLPKLTSLKIHPGPSDMWNYFDINTLPFFEVDKINPNITDFYFLDDWVSGERRTGWNDDNMSGRGLEHLTSFIAANSNSLRMDKLPDYIYEMRAITQFNVNASTHSQKRSDDFVNSFYDLVVGWDQITMTSVAKDGKRNQFYSLSVSMYNAICPTENQRPSGTEQAPEGFVKGQSNGSPATPMEKIYVLKNNYAQKWTIKPE*
Ga0111363_100034	Ga0111363_10003473	F064725	MTIKGLLAEIKADLHKYDDSGAIDTSSVYRWAEIALKRFGGVIAVMSEAVVKTSNKQAVLPSDFFDMLDAYRCEPLVCEIPGGDKAKADLQHEIGWVERTERGFRWNSCTECCKEEFEKTITEKIYIGSHEVRFHYHHPVRLSIGRGLRRDCAADKYRDKYAWDNYDITISGNTMYTGFDGFIYIIYRATPKDDDGLPYIPETALGYLEDYVETYIKMKIFENAAVNGLIQGAGEAYKLYAQQEPGKFARAMKELKMSMITLNDYRELAEDNRRRMLSYERMWPNAFDKYIKLI*
Ga0111363_100034	Ga0111363_10003481	F077313	MGKYVIKRKIPKYQEAGEVTPIMPGNVVGLQGIGVEPLVSSTQIGFDIQQPDINTIDTSDLSALVDSNKKVDKSGSTDVFDFTTIPYYGADDIGSRFTQMGRGIGRMRSEGYGDLSTGAKTANTITTIASGISGIMGLARNVVSGIASEKGTRTNIRLAQEREARQRRQSQMQYKDGGGVYLGPNNRFDSGSLTGEYLYPLPKSMEDQANVEVEKGEYVEQPGEAPMEAMGQKHADGGTPVSLEQGTKVITDDTTIEPDFAKYIRDTYGIKATPKDTYATLMDRYKAKIGLKSAYDDQKKALEKLKKNDKIDDENTRRLNASVLSKAINDSNDTVNGLEGRFTDFANVIYKEQEDRKMKKDEDTYFAKGGEIDNIISRSMKEYGLTEEDIAEAKKELLKKVAGIRQKMEIGGTSLFGRKLTFRPIENRFNNDPNYFGYQRQGTDGSYGGINTDERLNYYKTFNPVAYDAYMGASEGTRARALQDAIYGQTSSWMGLATAENPIIANAEALRDYTTLVSFGGEDSQGNYPEDKKAAYHDRMRDNKLGLFTTSRPMIGLDVVTEEQHKALNDAGITHFSQLFSDKNKDVVNKILGEDMLKMQALRSMKGMEGLDFILDPHKVAPGPMDIGDVENPDVKLDMPELIDPNTLPKTNTNAGKSNGGNGGRNIVGGGLDFPEVFRMTPGAVTTEGLERHYAPTVDPVLRSADQYMVEANRAFQSQLDQMGNVPDSQRGALSSNLQAIMSSNIGRYINEVEQGNVAQRTWADNVNSQSWANTYDKNIAQRQAYQQRILQGLAINDENWARYFDSVNDEIQQKWNTATTMNTLRSIFGDVKIGPNGQLIADPQGDILSYRRLYPAQEVTKGKKG*
Ga0111363_100040	Ga0111363_10004023	F090484	MDIPKNPSDFYLLQIMKLQLNRNINISLRLLEQWSDDPLFMELYALYCMIKISRRDSRIRFKNQKDLLHKLGIGYSKFKNMTGHPMFDELFRMTDSTFVARRYRVNGVQLTLGCGKVNIPKNRILIKIKKNEITNHEKVLDRIREAMFVNLVRNNESVLNSGEPNSQAEVVDGSHSYYGLIDSTISNKTIALYLNVGLTKEKEIVSMAIQDKLVKRFENIQFITYVDNPRAYIEANEHNYPIGKLIPVYRHRAVFWQIANTWTLYKKGATNRWYFGEKDIEKEEKEKVSKKNDFNFFLKDNTHILNFLNAEEVVSEDGEILGIDRKKTKEEEARSLASIMAKEAHKDFWDGYERSTQNQIVRKYYRAIIAEDKKRRMDMFLNCLKQSYDKVSGWSQEKIATVKSGMAEAEACCAEVGTSVAGVCGRISRRMKSYNNAVADKKADFNEVRDMYAEFAGEMAKAVGSVNEDIYTYVKAEQFKEKIENMDITIRSLSNNSTTDNDTELDGESIFKDIPFEELSFCNDTYLYPISHYSSFQ*
Ga0111363_102459	Ga0111363_1024595	F087334	MASRYPFVEAAAHLFPKNAIKMLSFSTSGKGSILLYPFRSSPLLAITFLYHPKDSFLYRAAALFEYREKHP*
Ga0111363_102515	Ga0111363_10251513	F032286	MVKWVCQIVTPVCHRALIFDVRLFTGNTADDALVTGGTFRFCRLMCLCVKRRNIMLNDKRHSLLNSALFRADNRTEQKTISPFSLALILTFDFAALSERRSCPEDRSRRFVLLGALDAALRRRTYPVRTVMQLSRFRCDCKTILAKNIALSRISKRSENAPKNADFHAYGQDRKGQKIEGRTTLCSQSSPFRNGSKTCAWSAV*
Ga0111363_103459	Ga0111363_1034597	F047126	VYLKTKKMTNISQTQAGFKSKSLGILCGSQGFLTQNPAALVETDDIFGVSDTPYGFSGLNTLRAAGVPNPPPPFAQRFIACFCSQTAAVSQSESAYILSSLESPCILCSLLRYFHILSKKLQKTC*
Ga0111363_106036	Ga0111363_1060367	F078004	LSSRNTDLLFRDLLFRKSSTGGLSAVAGSAALDVHMLRRTLIITIINALYRLTVDTDGMAWMRQRITERLSSLSLLRKALAAGAVTITGMLTSHHDVSLAAQTVLVIGTIFHNTF*
Ga0111363_106073	Ga0111363_1060732	F055715	LTKANEFDRINELLIERTAKKFERASKNKLKKFLTNEKLCDKINELIRVGTAEILDN*
Ga0111363_107552	Ga0111363_1075523	F044554	PGYICWFAAGGGSVSWRSASPCIFFHTQAYVLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISRYLFLSFSFSFRTNFAQALFSSLLFVSDTRAKSILFLLFENEIAHLQGQYRFDSHRYCFSAFLVL*
Ga0111363_107727	Ga0111363_1077271	F074964	MITKKNVNKLQNTVIKENASNLVGAVKLYNALFANGADLKAICKTLEIPTEYAVKVATLAKDKKRLVAVCSQMLPKVGDTFVKFSLYSKVYKDNKVDKEKGIEAKTADWCADNVVYGGEYKSFGFSTAETLETKKSAKWLVKETDEYKATYVAVKIKSYSIRTVAKCVSEYLSHESNQQ*
Ga0111363_107888	Ga0111363_1078883	F076189	VLSAGHCFFLFPFIKPLLYVEKLQIGTVLPVVSDLYREFAELSVHFDLRAIQSAQKQLRMLCNFHENTFWLLIFYANYAIL*
Ga0111363_109604	Ga0111363_1096041	F026489	ENQKSASDFDALEPRKRGCSPLLTPKGRATPEKTEDSRLFGVKIF*
Ga0111363_114397	Ga0111363_1143971	F076190	GGSITISVKNVLTAASRVSGRVWLLVRITVPNDLKFVRIRVEKPQNNSLYPYFQREPL*
Ga0111363_128026	Ga0111363_1280262	F066905	MISYKIKRREKNMPEEGRNCGCNNNGGFLNGLFGGCGCDSEILFFIIIFLLLFTNFGCGCQR*
Ga0111363_132789	Ga0111363_1327892	F067844	MNTLAAETASAWYLILNRKLQTLPIYITQLSSHLPRPLTMGTQQVSAGAAVI
Ga0111363_134647	Ga0111363_1346471	F072366	IKADVYQLERQGKRLPVYRYLREVWQKELPSEGLTVLALQQMVDYVEYVDDLTVLGEPWEVENEYDLYQDFLLDVISWGLQKYRAKKRLLWQICYYVNAWATFYYIFGREITQDNVEQWKKTLFKEAKERYPDSLLFEFIPHAAQLDYVWFYRLTDEQRLQIRLEVGEWNLQKNNMDQAVQSYFDDAMTWYRDN