3300008619: Human stool microbial communities from NIH, USA - visit 1, subject 159369152 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008619
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052981 | Ga0111235
• Sample Name: Human stool microbial communities from NIH, USA - visit 1, subject 159369152 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 61235788
• Sequencing Scaffolds: 9
• Novel Protein Genes: 9
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides fragilis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044554	Metagenome	154	N
F047126	Metagenome	150	N
F051936	Metagenome	143	N
F052660	Metagenome	142	N
F067844	Metagenome	125	N
F076189	Metagenome	118	N
F088914	Metagenome	109	N
F088921	Metagenome	109	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0111235_101546	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	7289
Ga0111235_102340	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides fragilis	4509
Ga0111235_105030	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	1741
Ga0111235_105301	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1636
Ga0111235_105900	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1430
Ga0111235_107054	Not Available	1118
Ga0111235_107170	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1094
Ga0111235_110426	Not Available	669
Ga0111235_112603	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → unclassified Subdoligranulum → Subdoligranulum sp. APC924/74	521

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0111235_101546	Ga0111235_10154610	F067844	MNTLAAEPASAWYLILNRKLQTLPIYITQLSSHLPRPLTMGTQQVSVGAAVITPQHRSYRVPQGSPQVFGGP*
Ga0111235_102340	Ga0111235_1023406	F051936	PLALRGKAFGFSVLQEHAVMTPVISIAKKVLIIRYLSIHISIKK*
Ga0111235_105030	Ga0111235_1050302	F088921	LGATIRLYKIGAGKNHFFYSEKSKSIVFDLDRETKKRKYAKETCRIYIEKDQNMQEEKKEKYINGEIYGEKNQIIVTNKLAMIRDKMRSK*
Ga0111235_105301	Ga0111235_1053013	F051936	PLALRGKAFGFSVLQEHAVMTPVISIFFEILIIRYLSIHISIKK*
Ga0111235_105900	Ga0111235_1059002	F076189	PPPSGGGGGVFFLSPFIKPLLYVEKLQIGTVLPVVSDLYREFAELSAHFDLYAIQSAQKQLRMLCNFHENTFGLLIFYTNYAIL*
Ga0111235_107054	Ga0111235_1070541	F044554	AYVLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISRYLLLSFPFSFRTNFAQALFSSLLFVSDTCAKSILFLLFENEIAHLQGQYRFNSHRYCFSAFLVL*
Ga0111235_107170	Ga0111235_1071701	F088914	VWGERFFFVFWSRKEGANYQISVKSFSNLDSYDIIQLYIMTELTDGRVSDRLFSVPYTPKENIKNPGEFIVFSAWYAAKALEMDVK*
Ga0111235_110426	Ga0111235_1104261	F052660	MCILRILPENTPEKIGQERAGTEWTVVKSKISLCIRNRSYGQFLHGGILMGIALPIPSHRAKSHDLAHWWPAAAGHSRSADAQPGNEQ
Ga0111235_112603	Ga0111235_1126031	F047126	TRSVLNEKLFVFFGYPKGSLTQNPAALVETDDIFGVSDTPYGFSGLNTLRAAGVPNPPPPFAQRFIARFCSQTAAASQSKSAYILSSLESPCILCSLLRNFHILSKKLQKTC*