3300008601: Planktonic microbial communities from coastal waters of California, USA - Canon-36

Overview

Basic Information

• IMG/M Taxon OID: 3300008601
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117987 | Gp0126522 | Ga0103933
• Sample Name: Planktonic microbial communities from coastal waters of California, USA - Canon-36
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Hawaii
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 5402680
• Sequencing Scaffolds: 12
• Novel Protein Genes: 13
• Associated Families: 13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Predicted Viral	1
Not Available	6
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas paralcaligenes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus pneumoniae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Staphylococcaceae → Staphylococcus → Staphylococcus aureus	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Planktonic Microbial Communities From Coastal Waters Of California, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Coastal → Unclassified → Coastal Water → Planktonic Microbial Communities From Coastal Waters Of California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal water body → coastal sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Pacific Ocean
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010914	Metagenome / Metatranscriptome	297	Y
F019998	Metagenome / Metatranscriptome	226	N
F037503	Metagenome / Metatranscriptome	168	Y
F042865	Metagenome / Metatranscriptome	157	N
F051069	Metagenome / Metatranscriptome	144	N
F051119	Metagenome / Metatranscriptome	144	N
F054846	Metagenome / Metatranscriptome	139	N
F058997	Metagenome / Metatranscriptome	134	N
F074867	Metagenome / Metatranscriptome	119	N
F075867	Metagenome / Metatranscriptome	118	N
F078696	Metagenome / Metatranscriptome	116	N
F091607	Metagenome / Metatranscriptome	107	N
F101265	Metagenome / Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0103933_10038	All Organisms → Viruses → Predicted Viral	2326
Ga0103933_10225	Not Available	1399
Ga0103933_10395	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas paralcaligenes	1186
Ga0103933_10507	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus pneumoniae	1102
Ga0103933_11432	Not Available	799
Ga0103933_11523	Not Available	783
Ga0103933_11858	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	728
Ga0103933_12345	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	668
Ga0103933_13230	Not Available	597
Ga0103933_13317	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Staphylococcaceae → Staphylococcus → Staphylococcus aureus	592
Ga0103933_14404	Not Available	531
Ga0103933_14802	Not Available	514

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103933_10038	Ga0103933_100383	F042865	MSLRVPDYETFLAADDFNKRIWWSFMQSVVNDLPLNGNVAPENTVRANKSCLYVESTGGAAVLWFNPNGNGSATGWIVK*
Ga0103933_10225	Ga0103933_102252	F037503	MHLGAASWLSFIEVELLIGCGGFTAYQLLINSECYKIYTAVRAWVLRSMSERETTQTII*
Ga0103933_10395	Ga0103933_103951	F091607	MSLELQISELNATIKTLNENILLLLGSKEQHSKVECSPIEPVNLGQTEQQTFLPEVAKSDEYTREQLQSLCLEATKRNAANRDIIKAIMLSNFEARKTSDLADNQINLCYSMIAQATKDD
Ga0103933_10507	Ga0103933_105073	F078696	MKLWSSAVSYLNIHPSEAWNLTPFEFWALWDTHLEKMEISTGKAYTRPMTMDEFNELSDFLDELHGDN*
Ga0103933_10507	Ga0103933_105074	F074867	MSSRGITDIILNGEAFELHPTFSNLDKLETVLNKGAIGFLRQDPSSGAFKTGDVVSIIQVCAVPANGRKFPNWWNRDGVGEAVIGAGLVGITTSVTHFLAKALTAGTETDIKTVGSESDEKK*
Ga0103933_11432	Ga0103933_114321	F054846	MSNELNLNDLGLGDNSQSAINEKMPRRGAEGRGQSRESRKSLSEHDTARKPERVPMYAQRTMIDTTLIPEGFHGHWVSNNPAGRIDMLLRAGYDFVTKDQNVYSSHVTENGVDSRVSKSGSDGVTLYLMIIPLELYEADQGAKAEKAKEQTATIFGKQRNDPDFFPVTKMAVIRQHLA
Ga0103933_11523	Ga0103933_115231	F058997	LLHEGIMIIYKGREMTVREACALMGIDCDDFMAWCKKFALQNYSYALNYYKRTLKFKK*
Ga0103933_11858	Ga0103933_118582	F010914	MIYNILTEQDGKFVATGETVECEFEETQAVIDELQAEHGCCCALEAVSE*
Ga0103933_12345	Ga0103933_123451	F051069	MAYRVSISSTELVTRAEVAAYAKIENTDENSIIDALITSSREELEKLLKIPLITQVWAQTYDSFIEPVYAPMIPLTSAALEIADSDGNFSANTYISVKKDTGRIAPTDVFSPDLQFDGFKITFTYTVSAIDATLKTAIMELTSYRFYNRGNLEAAKIPA
Ga0103933_13230	Ga0103933_132302	F051119	MKISEAFEQFDALRVANALGLEYGVVCKWRYREQIPAYWRVKFVNLMNHHNVAIKLHDLAGWIK*
Ga0103933_13317	Ga0103933_133171	F019998	LFPSYGQKRFDIPTVTNGVPAAYACLETDFRQNSLSVAALAGASSITLTDAVEYITGDYIGIASDSNGLMWYKVNSVVGQVVNLYEVGTTTASSLDYAASVDAIVVGFTTLAWQPLRIIEARRVDLSSDIEVPLMIV
Ga0103933_14404	Ga0103933_144042	F101265	TSLGGNKISGLKLATDLRLKRTYHCRITDVGEDYDLRIIISKSIGVYIVKTTSSEIVEAN
Ga0103933_14802	Ga0103933_148022	F075867	MNPALKPSTKHYLQYDAATFENEGFKTLNGRISQLALEPRFWSVSVKVITESYDGLKKIKDHFNFKTSERCKLSDLRDQVKKEVLDKDDYLPVCTQCLVTARVMM*