3300008598: Planktonic microbial communities from coastal waters of California, USA - Canon-40

Overview

Basic Information

• IMG/M Taxon OID: 3300008598
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117987 | Gp0126524 | Ga0103935
• Sample Name: Planktonic microbial communities from coastal waters of California, USA - Canon-40
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Hawaii
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 1735867
• Sequencing Scaffolds: 4
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	3
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Planktonic Microbial Communities From Coastal Waters Of California, Usa
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Coastal → Unclassified → Coastal Water → Planktonic Microbial Communities From Coastal Waters Of California, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → coastal water body → coastal sea water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Pacific Ocean
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000075	Metagenome / Metatranscriptome	2622	Y
F005505	Metagenome / Metatranscriptome	398	Y
F030108	Metagenome / Metatranscriptome	186	Y
F049026	Metagenome / Metatranscriptome	147	Y
F101265	Metagenome / Metatranscriptome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0103935_11213	Not Available	567
Ga0103935_11429	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora → Intramacronucleata → Spirotrichea → Stichotrichia → Urostylida → Pseudourostylidae → Pseudourostyla → Pseudourostyla cristata	535
Ga0103935_11448	Not Available	532
Ga0103935_11575	Not Available	513

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103935_11049	Ga0103935_110491	F000075	LIAAVSATQYDSMTEDELLVNLESTLNSAQRSEARGDGDAAVAKTAAIKNIQKALTARILKRLDDGQPLVEVARKMKAIEGMQPQINDMERRLGIMQSVEPVLENAIKTLQKVVDVRGMGKK*
Ga0103935_11213	Ga0103935_112131	F049026	GDGIDEVAAGEGTPSEDLSNAMAAYSAAISQTKDIKLSNK*
Ga0103935_11429	Ga0103935_114291	F005505	GTYVS*FYDAFLKEIQDA*Y*VLYVYVYFFIHHFEGVTVNYFFFER*NIAEMDEIRYYGVAPH*YFRPLMGMLIVCPTHYEGVF*LMFYLVLLAMLPIFYNFYNTYNKHVASIPMQNSLLQTTAFILFMMSLYCTASILPCGRYYYEPEGGYVGNP*IKFSYQYIYLYLA*IIHHLDV
Ga0103935_11448	Ga0103935_114482	F101265	SSLGGNEISGLKLATDLRLKRIYHCRITDVGEDYDLRIIISKSIGVYIVKTTSSEIVEAN
Ga0103935_11575	Ga0103935_115751	F030108	FMAFGAKAADFSGSVGVSSDNYFRGVNISDGAGYSVKGLVDLDNGIFAGASVMSLDDRTDLMTKAVIGYGRDLGGVKVDVAYIDYGYQGLSLDGWEEVAVKAYFDKFAVQYSKGLDNAGDTYIVSSDALEIVDVAYGDSDLTGSWFEVSKSFDLAAGSVKVGYIDHELND