3300008587: Microbial communities of Cyanobacterial mats from a recreation lake in Champs-sur-Marne, France - CSM2012-AB-F-D

Overview

Basic Information

• IMG/M Taxon OID: 3300008587
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117973 | Gp0126363 | Ga0103774
• Sample Name: Microbial communities of Cyanobacterial mats from a recreation lake in Champs-sur-Marne, France - CSM2012-AB-F-D
• Sequencing Status: Permanent Draft
• Sequencing Center: Centre National de la Recherche Scientifique (CNRS)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 18248415
• Sequencing Scaffolds: 12
• Novel Protein Genes: 12
• Associated Families: 12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	4
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Endopterygota → Diptera	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	5

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Microbial Communities Of Cyanobacterial Mats From A Recreation Lake In Champs-sur-marne, France
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Microbial Communities Of Cyanobacterial Mats From A Recreation Lake In Champs-sur-marne, France

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): freshwater lake biome → freshwater lake → microbial mat material
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Surface (non-saline)

Location Information

• Location: Champs-sur-Marne, France
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003666	Metagenome / Metatranscriptome	474	Y
F020696	Metagenome / Metatranscriptome	222	Y
F040623	Metagenome / Metatranscriptome	161	Y
F042902	Metagenome / Metatranscriptome	157	Y
F046876	Metagenome / Metatranscriptome	150	Y
F051945	Metagenome / Metatranscriptome	143	Y
F057131	Metagenome / Metatranscriptome	136	Y
F068418	Metagenome / Metatranscriptome	124	Y
F076150	Metagenome / Metatranscriptome	118	Y
F076654	Metagenome / Metatranscriptome	118	N
F079389	Metagenome / Metatranscriptome	116	Y
F080894	Metagenome / Metatranscriptome	114	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0103774_100111	Not Available	2706
Ga0103774_100497	Not Available	1574
Ga0103774_100604	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Neoptera → Endopterygota → Diptera	1447
Ga0103774_100634	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1417
Ga0103774_101839	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	856
Ga0103774_101869	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	848
Ga0103774_102441	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	735
Ga0103774_102721	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	693
Ga0103774_103779	Not Available	583
Ga0103774_104074	Not Available	564
Ga0103774_104842	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	517
Ga0103774_105066	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	504

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103774_100111	Ga0103774_1001112	F003666	VRIHGGEFGESARAIHRIELERSSSSRIGEIPRFD*
Ga0103774_100497	Ga0103774_1004974	F042902	MTLKDLIDLAQDRDLAKSYPKADGLYIWDYKLVDGDKLELIVSDSGKTGFKDKVSVDELVNYILEETNPQLPADEIISQMKIVGAEGITIARI*
Ga0103774_100604	Ga0103774_1006042	F068418	MDTGIGDEVGLEFSDIDVKGTIESEGSGQGRDNLSDESVKIGVGGSFDIEVSSADIVDSFVVEHDSDVGVLEEGVGGEDGVVGFNDSG*
Ga0103774_100634	Ga0103774_1006344	F020696	MNKVETCHHCGEEKENCYHGFIALTIPHPDWEAKIDKWGRKDWWKQLERTDLTPEQMEELDHICSYDQALNTVGRGVQCDDCGKKEAELYEKYYPKSLES*
Ga0103774_101839	Ga0103774_1018392	F080894	MIDIKGKWKVKGRKVAKTSSPMIGMVYEGTDKFFGKTVVGVLIEMFDQNDEAVLRTIENKLVSVDKNSLNLVA*
Ga0103774_101869	Ga0103774_1018692	F057131	KDLFQQKLERLEAEVKKMGYHIHRNEQAIAYAKVEELLGSISDIQTLLNTEHQD*
Ga0103774_102441	Ga0103774_1024411	F046876	SNKEHKFFERQIDINNLEELEKLLLSQYERIQKGDLIKGQQNKNTPWDSSGSVTTVNWNKYNVFQFYDPNIHTLFRAVKDMTLDACKHYGLDFNKEQFMVQGWFNVNYNHIGKLDWHEHGGEGAPHFHGYYCVKAEPSVTHYRVFENEIENHNKNNRAILSETGHPHAMGDWDWEGPRITIAYDVIPLRLIPREWEQHWIPLV*
Ga0103774_102721	Ga0103774_1027212	F040623	MKVRIAIEQIIDIEDAMSNDMYFDLYGPTDMSNDDKVDYLVARFVEDLNTLAINDEISNQVLVEYIED*
Ga0103774_103779	Ga0103774_1037791	F051945	MKKLFILTIAITASLLFVQCKKTEVLTEEIISTEKSLTGNVLEGTNWEVLTVVSVPKNVNINFTVKHPKMNFYNDYIEMKLGRDICSKHYLFATDNITVDFAACTITNPNHQALSDLLEGDFQYIISDNGNEMILKNNSETEITLRKSCSVGYYNSSCC
Ga0103774_104074	Ga0103774_1040741	F076150	LTFSTEGNAVGKVVRRTGNVGCQFEVGTPRGITRRNYAKNKIIQFYYCEFHYDRVLKTERYVRVQVVLLPTLMIPYQRNCFEVILMYGNGDISQSS*
Ga0103774_104842	Ga0103774_1048422	F076654	MRLALVLVVAGCGPVTVSSVAYTTACPKGDAQCEIRQNAETLYYMAHEDAANELLCSGDTRDVMGALCSVY*
Ga0103774_105066	Ga0103774_1050661	F079389	MIQAAKDKGWHLTLAASHYGMHRSSIAAACERFGIVLPMHQFSPQRVSPKSRVWVDIIDGETKPKVKLSASPAAIQRAIDDIERQKRLQALG*