3300008571: Human stool microbial communities from NIH, USA - visit 1, subject 763901136 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008571
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052870 | Ga0111077
• Sample Name: Human stool microbial communities from NIH, USA - visit 1, subject 763901136 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 163086704
• Sequencing Scaffolds: 15
• Novel Protein Genes: 15
• Associated Families: 15

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026489	Metagenome	197	N
F042936	Metagenome	157	N
F062845	Metagenome	130	N
F067844	Metagenome	125	N
F068811	Metagenome	124	N
F071325	Metagenome	122	N
F074899	Metagenome / Metatranscriptome	119	N
F076189	Metagenome	118	N
F081354	Metagenome	114	Y
F087335	Metagenome	110	N
F087336	Metagenome	110	N
F088914	Metagenome	109	N
F089053	Metagenome	109	Y
F092228	Metagenome	107	N
F097493	Metagenome	104	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0111077_100008	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Ruminococcus → Ruminococcus bromii	309860
Ga0111077_100661	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	31268
Ga0111077_100794	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	26801
Ga0111077_101397	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	17138
Ga0111077_102003	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Subdoligranulum → Subdoligranulum variabile	12460
Ga0111077_102703	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	9459
Ga0111077_105354	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	4894
Ga0111077_108568	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → unclassified Oscillospiraceae → Ruminococcaceae bacterium LM158	3015
Ga0111077_109417	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2731
Ga0111077_109788	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2624
Ga0111077_110638	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	2396
Ga0111077_113669	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1812
Ga0111077_120764	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1157
Ga0111077_136808	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	621
Ga0111077_139719	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium	573

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0111077_100008	Ga0111077_100008117	F092228	MKKKCTLVLISVLTVACIVSAYLLFFYNPSFNMVYDSDTDSYFNNSYLSYNDGTLAAADYRKTKVTAYDSKNNSTVNLPSNGSLINDNLFYINGDKLCCLDTTTNTRKTIDTDCRSFVCNNEVIAYTKNDSVILKDSDTLENIGDIKFDNQIYYINISDGNLYIVERIFEDKTDEYGYSFKVGKQYIFKKYDLKSCKLLKSKNANYVNGIRYVTVCKDTFYFFCDETQTVNNVCLDKDVNYPTIQHPDVKFITPNNDCVYYISEKTESAIICKTVESPYNGIWKLEVGSNKPVKIADKCDCDELLATKNLLYCYTINYILPRGLANSWVKGYLIDQLAIS*
Ga0111077_100661	Ga0111077_10066135	F087335	VHNERKTDMIELYFNDANLLPENREEEQYAEAARNNILAGKTADTEMCILPCFYDAPLHKGLLYHLNDGTTLRIRPVLNEAGEPELLIRCVTEETVEEMYQRVSNYDKEKEL*
Ga0111077_100794	Ga0111077_10079420	F087336	MHCLLRGMVAELEQVPKAFRAAGRQRRAAAKERIKDDAIGYGRVSDRILAEIEDNHMRERDTKIGLAEQRQVAFLEIAFQILPLKSKQKRAP*
Ga0111077_101397	Ga0111077_10139714	F088914	LQRLFVFWSRKEGANYQISVKSFSNLDSYDIIQLYIVTELTDGRVSDRLFSVPYTPKENIKNPGKFIVFSAWYAAKALEMDVK*
Ga0111077_102003	Ga0111077_1020032	F042936	MGRGGGKGRVWKTKEGIMKTSGIVDRGEDTIRNFEKVEQKGALTPPYLGKVCFRSRLRGKG*
Ga0111077_102703	Ga0111077_1027039	F071325	ALLSDSSIIISKVVLFVKHFFDIFLSFPNAFSKAFHPYAVRFPAAFLLVHRFYLAFEELLSCVTAYL*
Ga0111077_105354	Ga0111077_1053542	F062845	MEKTPFILHEKFRSDNNEQRKEHFQKEFERYIVDEMSDTVHSKSCV*
Ga0111077_108568	Ga0111077_1085683	F074899	MSGWKQWSKQAVTSSFLDKKPPKSLVQQGLEGSTPVGKDEVGSSNLPSSSK*
Ga0111077_109417	Ga0111077_1094171	F067844	MNTLAAETASAWYLILNRKLQTLPIYITQLSSHLPRPLTMGTQQVSAGAAVITPQH
Ga0111077_109788	Ga0111077_1097883	F076189	VLSAGHCFFLFPFIKPLLYVEKLQIGTVLPVVSDLYREFAELSAHFDLHAIQSAQKQLRMLCNFHENTFGLLIFYANYAIL*
Ga0111077_110638	Ga0111077_1106383	F026489	NQKTTSDFDALEPRKRGCSPLLTPKKWAAPKKTEDSRLFGVKIF*
Ga0111077_113669	Ga0111077_1136694	F089053	MEGPRPDKFAFSEKLERVVDGCRPIKGCIKKRIYESANGQLKLSTAEEVNVKNMEAFL*
Ga0111077_120764	Ga0111077_1207642	F068811	MDQDGSEHNICSNREGLCPGKEQHGASGWKKIFQHGKEPLRNKDSVSQYCNKKAAVSLILNENVSETLCIFSIDKTNCCRI*
Ga0111077_136808	Ga0111077_1368081	F097493	YSKNGQAQFYEHGVEIDGTVYGIHTDRDILRIKRSVVNNKFAETDDNFDMDTEIAKIQHTSITFKQPTAEQLSQIQAKTYNSMTELKQHVQSIMNGELTQDEINAMLMLQIAELKAGVGGE*
Ga0111077_139719	Ga0111077_1397191	F081354	LSAKKALDLVRENQQSSAHNFVKDFSLILPKSCRRAPLKEGAVPEISLEYGKTEVQTLFEPLQAAISSMELPKNFENKKLPNTLRRLAFSPFHL*