3300008568: Microbial communities of thrombolites from Highborne Cay, Bahamas - Zone1_total_RNA

Overview

Basic Information

• IMG/M Taxon OID: 3300008568
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117975 | Gp0126373 | Ga0103784
• Sample Name: Microbial communities of thrombolites from Highborne Cay, Bahamas - Zone1_total_RNA
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Florida
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 25947518
• Sequencing Scaffolds: 3
• Novel Protein Genes: 3
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Microbial Communities Of Thrombolites From Highborne Cay, Bahamas
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Microbial Mats → Microbial Mats → Microbial Communities Of Thrombolites From Highborne Cay, Bahamas

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine biome → cay → microbial mat material
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Surface (saline)

Location Information

• Location: Highborne Cay, Bahamas
• Coordinates
  • Lat. (^o): 24.72
  • Long. (^o): -76.82
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015563	Metagenome / Metatranscriptome	253	Y
F047147	Metagenome / Metatranscriptome	150	Y
F060086	Metagenome / Metatranscriptome	133	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0103784_1001629	Not Available	951
Ga0103784_1003740	All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera	655
Ga0103784_1005942	Not Available	531

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103784_1001629	Ga0103784_10016291	F047147	MFLITFILAVTEGLVREEQLLHDLCLLGAVNAEIIQILTRAGLF*
Ga0103784_1003740	Ga0103784_10037401	F015563	QGLKPAFWGKWGALNPKHAEKYIKMAYNRGYGQPLLTSKVYHADEPTTWLTFFARRYQYDWLKHIAMRVDAQRVPLYVLRRQLWMARFEYYMRRFQTRKAISNAAKVEWAYIKERIAQPFTWTGRDAQHFFFWLLNVAAFFAIGEVIARQNIYGYPVATPEWTPSKPKFAPGFYHTYYPFEDYPFENNPNMITKQFNRSSWWHNTNETYWAPHRVLAT
Ga0103784_1005942	Ga0103784_10059421	F060086	NLLLSSGQHGEDRKRQYFLYDHETPLLADLADLLYIKYGIAFLVLF*