3300008543: Microbial communities from hydrothermal vents in Mid Cayman Rise, Atlantic Ocean - CTD-08-49

Overview

Basic Information

• IMG/M Taxon OID: 3300008543
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0117952 | Gp0126196 | Ga0103607
• Sample Name: Microbial communities from hydrothermal vents in Mid Cayman Rise, Atlantic Ocean - CTD-08-49
• Sequencing Status: Permanent Draft
• Sequencing Center: University of Michigan
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 28874195
• Sequencing Scaffolds: 1
• Novel Protein Genes: 1
• Associated Families: 1

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Microbial Communities From Hydrothermal Vents In Mid Cayman Rise, Atlantic Ocean
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Hydrothermal Vents → Unclassified → Hydrothermal Vents → Microbial Communities From Hydrothermal Vents In Mid Cayman Rise, Atlantic Ocean

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine hydrothermal vent biome → marine hydrothermal vent → hydrothermal fluid
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: Atlantic Ocean
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F063612	Metatranscriptome	129	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0103607_1004033	Not Available	711

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0103607_1004033	Ga0103607_10040331	F063612	VAGGSPADEAASVAEESGLKIPRRGTGSKEDVYSPAL*