3300008522: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 765135172 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008522
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052931 | Ga0111045
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit 1, subject 765135172 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 124642862
• Sequencing Scaffolds: 19
• Novel Protein Genes: 22
• Associated Families: 20

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	5
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2
Not Available	3
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus parainfluenzae	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ct6uZ8	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032313	Metagenome	180	N
F043991	Metagenome	155	N
F046432	Metagenome	151	Y
F054110	Metagenome	140	N
F067846	Metagenome	125	Y
F068942	Metagenome	124	N
F074985	Metagenome	119	N
F077405	Metagenome	117	N
F081455	Metagenome	114	N
F084362	Metagenome	112	N
F085820	Metagenome	111	N
F089057	Metagenome	109	N
F092229	Metagenome	107	N
F092232	Metagenome	107	N
F095629	Metagenome	105	N
F095631	Metagenome	105	N
F099452	Metagenome	103	N
F099453	Metagenome	103	N
F103436	Metagenome	101	Y
F105379	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0111045_100094	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	50311
Ga0111045_100106	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	48215
Ga0111045_100554	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae	20037
Ga0111045_101385	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	11167
Ga0111045_102201	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	8025
Ga0111045_102988	Not Available	6439
Ga0111045_103128	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	6244
Ga0111045_103925	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	5261
Ga0111045_104147	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctYA416	5040
Ga0111045_104321	All Organisms → Viruses → Predicted Viral	4879
Ga0111045_104751	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	4515
Ga0111045_106655	Not Available	3448
Ga0111045_107337	All Organisms → cellular organisms → Bacteria	3178
Ga0111045_110609	All Organisms → cellular organisms → Bacteria	2300
Ga0111045_112913	All Organisms → Viruses → Predicted Viral	1910
Ga0111045_115509	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus → Haemophilus parainfluenzae	1591
Ga0111045_129028	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	839
Ga0111045_133661	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ct6uZ8	715
Ga0111045_140199	Not Available	584

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0111045_100094	Ga0111045_10009416	F089057	MINVIPLIAKKYNRKGDTSGSLKSLISDLNCVTDNDDVLLFLSSIPRETKYSLDDAFDIIVSNDEYSNIFRATLVFLNIDLDYHRLLLNAIKSESYTIICMINKAIPTPDLFLAKNNYECLTIALDKSYAIFDKVLGMVVGQIKHTASSKEGRALGIFMTLCILNKDIDKLASLCTGYLATCRSEYMVKDLMNKSAIDAFQYMSEEDIHIVVDDINSRTVLSRYLNKI*
Ga0111045_100106	Ga0111045_10010616	F081455	MENVECISNLISKCSDYINRKEKNTNTEEKDIPPVEEIGAETVDIIDAAEEAIQQPLQNKDASIAVNFSQMVNKPKEEVKTEVNSVPPEGETKVNVLFPKTEHILGNYVDYDSFIKIKESNTDKVVRAVRLLNYKMSDQNAAAAFAQFVSTFNPEGDLNKRLRYELIRHQGREKDLVIRLSTVLNGTTKYYADIYPDLNKIDLDHHLISSAKK*
Ga0111045_100106	Ga0111045_10010620	F099453	MNRFDVIELAQQTLTFVYDTFNGKVNTLDPYTRLNFVSGYLDTKTNIARTTPYGCIYVSLEAFADTVERQGFIDTDQIRNLALEIIIHELTHVDQLIDYKYIKFNNGYRDEVELKCVKQSCQWILDNMQYIRSLGLVVIPEVYQARLANLGNIIYTPKYPIAIAMAKLEYMLGRKFREFSNNNIEIQYIDRLKTHYSFMVCENRSYINSRNLNDLGERLLNDKQYTVEYLEYGNSKLVIKITQGV*
Ga0111045_100106	Ga0111045_10010639	F092229	MNKEYRFNHIPEVVLRNIRFIRDNNIDIGTGDDVLECMMDINPVVRTKIYDDYEFAKDVAERRFGSTIEGLDLRTVLQKCINRPYNSILNNIFFRYFNSELIDDLFKLGQSPKVLDLAIEYECEYYTVNAAKTNIRRYNTDAYYNKFAADSNIISSHRSLHDPQVNAVKSAEFTYDLLMASRAEEFNPEIVREIFVKYGLKPNSSRNLYNRINDNLNLFYYIEDYLEEYKEEGRFIYGTKEYKILKELRSLPLMVVLTQLTRKNDSGYVLNSNLELVKG*
Ga0111045_100554	Ga0111045_1005542	F067846	MESLQAQWERKTFNDYDRRCCAEDAYNEAIEREIECIEDDISNGDSDAICAFSEKMFDDDEFLKAVALGTDYEEMRIKILTAMAEDRLEQIEEDYRKGYILND*
Ga0111045_101385	Ga0111045_10138513	F095629	MTFKERMMRELIICVCLLGCFGVANANNVEQPKEVKIVHNDDSVILHKKIYQLEKRIERLEELLKKEDK*
Ga0111045_102201	Ga0111045_1022015	F095631	MASDAVSVNKTLRSYQETVLNTVQNDTLLNANIYDIHQYIENIKKRYVDEDEITLSMGIFGYMGDVNSNALQNAVTMAAEYSNEAIPIKAKFEKNVISHALMLGINKIFAEPATMQAMFVFYEDELILNTVSDTFKFDRNIKIMVGDYEFHLPYDLIIKRIELPTGEYIYTGMYDTTQSNPIITRNSNDVDPYLKPTVRSKIDGRNVVMLLVDLRQYEYTTYHKTIITTNPLESKMLQFEFDNQLAGFDVDVKEYDQPTRKLKPVYNGLNTDGINNFCNYTYIDSSTIRVMFDNSSYLPTANTEVTVNLYTCQGSNGNISYKDSIYFRVKSEKINYDRLNLLVIPTSDAQYGIDKRSIADLKKLIPKEALSRGSVTNSTDINNYFNTIDDDDNKLFFFKKMDNPLARLYYAFVLMDSPTNIIPTNTIPIEAIRRDFDNISDSNYILTAGNIIKYDGTTNASVAYQSSEEELNNARKNQFLYMNPFMCIVNKKPLYVSYYMNIMDVNKLLEFTYVNQDSKVQFVANKMNWYRHYLSERDTYVGDISIMQNIQSDIGLVHRDDPYDPEKITGVDVKVLAVFYTDEKYQVPYRWAEAEFVNYDQNTFIMDYKFKLNTDNKIDKNIKLKINNVYEVGNATRLSPGYMTNNMNMKIFVFAKDVFGYNAGLHKADQIFTADFLEGYSLTNEYTVKYGIDFLYNYSDLIESHIKIRKQDNGQISYIIDRVPVISYDYVNTEERIQDFINNLEKKRIHILECLDVLEDSFGIDIKFFNTYGPSKLFYVNDGVPLNRVNLSMTFKVKFLTTTDKYLTEYIKNDIRKYIEDKSRISDIHIPNIITFITQKYAENVTYFEFLDFNGYGPGYQHIYRKDESIVGRIPEFLNINTIGTENNALDINIIIA*
Ga0111045_102988	Ga0111045_10298812	F084362	MNCTFTVRWSDEKNKPHAKTYATEDDAKRAKKWLLEHGVRSVDIAVKINNKPAGSLKDDNPSESAAEQKGFWWQE*
Ga0111045_103128	Ga0111045_1031285	F092232	MNTQAKFIAEYNDKNRPKFNDKFFNKSDDDIIEDLKDVILSCERNKFYTIKVLNFEVIDDYNEVQKLLIGDETPSISIKDSDLKILKVTYHVACTKDEDTFDVLIAIPRVIDGAYIHLNGNDYFPLFQLVDGSTYNNTTASSAKTQSITLKTNSNAVKMLRNFIDLNTTNEETVRAAMFSVYLFDHKVTLFEYYLARFGWYETLDKFNFEDVIKISDHDLNDPEYYTFAIANAHMKTPFYISAVKSFMDNDRILQSFVASFARAISLYATKKTTLDQIYTTEFWICKLGYNFVSSETSVFTKGNAIIESLENSYDIPTKKRLRLPDHIKEDIYSVLKWMACEFSSIRLKNNLDASSKRIRWSEYIAAMYIMLINVKLRRLPEKHDPNMEAYRIKQQLNTQPMALIAELQKSNLKGFRNMVNDRDSFLQLKYTIKGPSGPGESNSKNVARNVRAIDPSHLGIIDLNTSSASDPGVGGMLCPLNYGVYEWNSFTNEEEPNVWDENFSKMLNIYREEKGYTSAIMLADDAGLELTDAR
Ga0111045_103925	Ga0111045_1039255	F046432	MWEMTENELNEIISKYQMPEVRYLVEEEGSFGESEFFWVIQNQSTNQKYLLVNTYSHHGVEAEVEYYREEGFDNLEAIPRRIETLENASDADDEISKYLFGMYSIFEIKS*
Ga0111045_104147	Ga0111045_1041477	F099452	MDKTYAELLQETLSKIYELKDLNNRDRGKALTIFIGERLNRELLLSSMNIFNLYKEIVNLDDVSLLNDLRKTSWYKDWFISDKRNSDLIDLSKFNFRSLERFEKESYLKDVEHYDFKKVIEVDSYSLYDTLAEENGVDLFKLAAENILINHGFFNNTDYNLYDIPDKYMEDIEVSLYMCLLNSGNMDFMDKKTFKSTELFYIVKNDICGTIFFTLFDRMNEDTRTRVR*
Ga0111045_104321	Ga0111045_1043215	F054110	VNYQPTIKKLLKALQMNGRRYVVDVRQSWSKYDKPCKIYIVSRMYTEEEYKLTFPEKYKKGKTFKQGQLYKKESEYSSTKQHEVLLFLVRTYKGGD*
Ga0111045_104751	Ga0111045_1047513	F103436	MITTSKGGWRYKSDFEIFDSLRDWVMKCDVKYVKRDALDKIDYARSLWCRAEYVAAVHLLDENEVFLKKSDWPYYALGIQILRARKHEFFNE*
Ga0111045_106655	Ga0111045_1066553	F032313	MYRFLILIFALTLMACDNNTPQEKPREQEKHEVPVSKPKPQFDEVGERIWYGQTPAMRLDSTNYGAGLTSVFGMRTSSISKQRFDSLFKQTVWEIKDIRVVETDLSLAKKNPGIMGWVTTTEFTCRNGVIVLHRQGINVNHVDTVNYVYDEVGNEIVLDTGIRWSVLRLNKNAVEFLQRGRTMWGPFDWYYGRNSGRSEVTLEAK*
Ga0111045_106655	Ga0111045_1066554	F032313	MYRFLILIFALMLMACDNDTPQEKPREQEKHEVPVPKPKPQFDEVGERIWYGRTPAIRLDSTDYGAGLTWVLEMRTSSIPKQRFDSLFKQTVWEIKDICAVETDLSLAKKIPRFVGGSIAKEFTCRNGVILRHMQGIDINCVDTVNYVYNEDLNEIVLEGTGIRWYVLRLNKYAVEFLQQGHNIWGPFDWYYGRNSGRSEVTLEAK*
Ga0111045_107337	Ga0111045_1073371	F046432	MWEMTESKLSNIISKYQLPMDNYLVEIDGAFGRGEFFWVIKNQSTNKKYLLVNTYSHHGVESELECYREGGFDNLEAIPRKIETLENASDADDEISKYLFGMYSIFEIKP*
Ga0111045_110609	Ga0111045_1106092	F085820	MRSTFYLFAMLFVATTFFSCETGEPAPRATWGEIVNPIEAFMYPRDLKVFAGDNDGRRWLILVIPDSTKSSFAPTSKSTPAEVARYKELSQLVGNPTEPVVNECHFHRTWLTQGVKGIRVLRTRADGRDEDVTAQCGNLYFYTDKQIFDCQFKCGNRSIFAKPLGETVEADYLWLPGRDVFGLVAPLNPDGLKQRIVLRLADGTEIEKELSEKGKK*
Ga0111045_112913	Ga0111045_1129133	F074985	MMELTDGGWYKTPRIIKGSDFLAHIHDTYASGNAMYVEFKASEGEVRILEYKRLYDVDTESAVLFTINTYPQESILLKNIEEYEFIQYRPQQAWKAIHMGSTKRFNLEQFDQLWLDQTFQKLHPVIVNHDGKFWYVMGLKLDVDADGSFWGLYLKRQDSDFMKEIRMPLTQKFIYNPISGSWFLDDPTQEIKDLEEIKQTLRADAILDVTVSGVPMKLIRVQEIAKGVLFFVFQDEEKNKRYYYNRPAIKLRIVTDSKTGEQKYLLDHIKAMHID*
Ga0111045_115509	Ga0111045_1155091	F077405	CRALPTELFPRLLVVKQRGVFYGFIVLCQIKFVKNFFDWLKIVQK*
Ga0111045_129028	Ga0111045_1290282	F043991	DLNGDLNEEAYEFEDVKLDEYIDKRSNVKPSWVGKYSHQMHFDLPDDTEVSFYKGLNIVCADINFAGGIRTILFKCRQKKNLTRFISRVLEIAQGDPSNVHPDFRA*
Ga0111045_133661	Ga0111045_1336612	F105379	IIGVGPEKSYFQTTSFMVDLSPHINNLLVNISDLKNLDKITQLEPSKENPEIAIHKPVVSVFNWDAEYVKACMNSLREYQIDDNIIARTDEFHNTDCYNELMAGSASTGAFRINIGGYMIDIPKSAIPTLKSDHVVATVYNAPNKDFNVLRFKITKRNGIIVNQSMLFLPY*
Ga0111045_140199	Ga0111045_1401991	F068942	RKILSLPTLALCFTLCTALFAGCGENYDGSVTEVHWSNVKNPEYGNAINITLKAEGETFTTVGDHSWISFSNDASTLDTFTRHRFPEMDKDTAYYKDIVIYLTRNESKGTATLKLVAPPNRTQQPKQFKFSVSVTPPGLYIFKVRQPALPAKAQ*