3300008513: Human stool microbial communities from NIH, USA - visit 1, subject 160319967 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008513
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052930 | Ga0111022
• Sample Name: Human stool microbial communities from NIH, USA - visit 1, subject 160319967 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 115794576
• Sequencing Scaffolds: 9
• Novel Protein Genes: 10
• Associated Families: 8

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides uniformis	1
Not Available	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Phocaeicola → Phocaeicola dorei	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047125	Metagenome / Metatranscriptome	150	N
F051936	Metagenome	143	N
F055775	Metagenome	138	N
F068811	Metagenome	124	N
F076189	Metagenome	118	N
F078004	Metagenome	117	N
F099451	Metagenome	103	N
F105374	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0111022_100006	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides uniformis	298705
Ga0111022_100388	Not Available	46226
Ga0111022_100727	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	29014
Ga0111022_102519	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Phocaeicola → Phocaeicola dorei	7557
Ga0111022_104861	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	3356
Ga0111022_104882	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	3343
Ga0111022_108079	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Faecalibacterium → Faecalibacterium prausnitzii	1810
Ga0111022_111214	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides	1220
Ga0111022_120014	Not Available	628

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0111022_100006	Ga0111022_100006105	F051936	MKQEGTGQVLFFPLALRGKAFGFSVLQEHAVMTPVISISFSMLIVRYLSIHISIKK*
Ga0111022_100388	Ga0111022_10038851	F055775	MAQIAQQDNLVIEVTTTAAALDGATKKKLIECIEGGTITDVILVTKEVEKKISHARVVSWLVDTTEDSPKYTIDIINANSGAVEAIALN*
Ga0111022_100727	Ga0111022_1007278	F105374	LRPGFGAAENIRYLVLSKGVFAMKKRVALLVALCIWKVVAAQTPYGEMPELFRPDTLPCRLGGGVCFGMDGLDAAIPRGEGASSCRDPRVVFVAGDTLITFISVAGVANTALGDPVCRFYGRNVARVVSRTRRMTGGRMGAADNDFPDDPDFAELQGVVIENQRYPWESYAAGDSAYRLPVARSLVGGKEDPLLGSDMRRRYVRLLTEVSVELKAGGTRPFVHVVYLLPDP*
Ga0111022_101310	Ga0111022_10131013	F078004	MIRHTLVIAVINTFYRLTVDTDGMAWMRQRITERLSSLSLLRKALAAGAVTITGMLTSHHDVSLAAQTVLVIGTIFHNTF*
Ga0111022_102519	Ga0111022_1025197	F099451	MRIDKIKTVGQLRKVIENLSDDYEIEMRIRRKLTDEDIIELHKKYGKIYPYPYETSYSELEFDDVGVSDKVLCLGVELKDE*
Ga0111022_104861	Ga0111022_1048617	F076189	MPGRLCYLPGIAFFLSPFIKPLLYVEKLQIGTVLPVVSDLYREFAELSAYFDLYAIQSAQKQLRMLCNFHENTFGLLIFYTNYAIL*
Ga0111022_104882	Ga0111022_1048822	F047125	MDVVLLLMVLAVMLSGFWAADALDHMRKEILQQEGKRRGWWS*
Ga0111022_108079	Ga0111022_1080793	F068811	MDQDGSEHNICSNREGLCPGKEQHGASGWKKIFQHGKEPLRNKDSVSQYCNKKVAVLLILNENVSETLCIFSIDKTNCCRIK*
Ga0111022_111214	Ga0111022_1112143	F099451	MEIKNVGQLRKIIENLSDDFEIEMRIRRKLTDEELKNCRYPYPYDTEYLTLEFDDIGVSNKVLCLGVTSNE*
Ga0111022_120014	Ga0111022_1200141	F051936	PLALRGKAFGFSVLQEHAVMTPVISIFFVMLIIRYLSIHISIKK*