3300008504: Human tongue dorsum microbial communities from NIH, USA - visit number 3 of subject 159753524 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008504
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053196 | Ga0114860
• Sample Name: Human tongue dorsum microbial communities from NIH, USA - visit number 3 of subject 159753524 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 92880353
• Sequencing Scaffolds: 5
• Novel Protein Genes: 9
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	2
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Tongue Dorsum → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040149	Metagenome	162	N
F043235	Metagenome	156	N
F054109	Metagenome	140	N
F076191	Metagenome	118	N
F094007	Metagenome	106	N
F097527	Metagenome	104	N
F098763	Metagenome	103	N
F103430	Metagenome	101	N
F105376	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0114860_100001	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria → Candidatus Saccharimonas → Candidatus Saccharimonas aalborgensis	703064
Ga0114860_100007	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	371140
Ga0114860_100022	Not Available	199339
Ga0114860_100086	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	86900
Ga0114860_110569	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1461

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0114860_100001	Ga0114860_100001116	F105376	MNEKSEVSAKEFGALWANVEHIKESVDRHTTTLERIENIARANVTQAQLKTYIAEHEKESEEKYVKRTEIEGVMNFWSLVTSNLAKLFAIALVGLAIYATNNLIQQNKTVTELQEEVQQSQVRRK*
Ga0114860_100001	Ga0114860_100001140	F103430	MEQITIKAFIGSNNKTKKLEVDKIISTVNTNHEAFTLQYPVIGCWRGETEQTAILYLSDERSKVMNTLGELKEVLDQEAIAYQIENKINLI*
Ga0114860_100001	Ga0114860_100001144	F076191	MKIIAENPAEEALLWRIKALSDELVNQDNRSTSMPVWTILDNNKAGKDYGAVMYFTGKAAEQHIKENDHHYDNPMISVRSAHDNRELKDVIHLLILAGGNEIPSNHYGVLRDA*
Ga0114860_100001	Ga0114860_100001360	F094007	MKSKTVEVLELARPNRAGIIDVVDSDGNVVPLDYSGEDFAPDVNSYSGKDFTKRNRIIVEMCDLFGRIRRRAGFAEYHRGRGNYDRARRIERNRGSDISEVGRLAINACESCPLKLDCELYGKLGEAVLNDVLDYKKVRTATSLTKAGKKRSSWNKGCIDNDA*
Ga0114860_100007	Ga0114860_100007137	F043235	MDEVVPSDEGHLLIDLCDDDPRSLCGGLGIVTRHPEGAVALFIGLAHRDQCDIDRIDTIPKEIWEFMEVTREIVDTLIQVSGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHVEDFYVREALAIIVEGFGETAGGCHSMAKDQEVPALYCRSHGVKGGRSMASNVLLPGSAH*
Ga0114860_100007	Ga0114860_10000771	F098763	MDRRTSLRVLSTALYLATKLFKAVVWTTISYDSSDEVEGKGGMNAIPTAVDE*
Ga0114860_100022	Ga0114860_10002242	F054109	MVGRPKSKKGTKVHTAFKIYPVDKERAQNMADKLGMSLSAYINKAVLEKVERDEKSEN*
Ga0114860_100086	Ga0114860_10008626	F040149	VADEGAEELRWEVLIKEQGIPVLFVEVEAWYDGRVSSSEILRSVGVALEREPWLAPVWSHDSEDAIDYFIYDRFVPKGHTLTAVRERETVVAQLLNIHRYVYYP*
Ga0114860_110569	Ga0114860_1105691	F097527	MIYFKMEKIGNSTYNKEKKTRSENLVFNTIPAAGVEPARPCGH