3300008483: Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 764083206 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008483
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052874 | Ga0105906
• Sample Name: Human buccal mucosa microbial communities from NIH, USA - visit 2, subject 764083206 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 113378457
• Sequencing Scaffolds: 11
• Novel Protein Genes: 11
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas bobii	1
All Organisms → Viruses	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030786	Metagenome	184	N
F041827	Metagenome	159	Y
F042387	Metagenome	158	N
F047127	Metagenome	150	N
F054109	Metagenome	140	N
F090517	Metagenome	108	N
F097527	Metagenome	104	N
F101360	Metagenome	102	N
F103431	Metagenome	101	N
F103434	Metagenome	101	N
F105377	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0105906_1000211	Not Available	30628
Ga0105906_1001641	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	7600
Ga0105906_1001900	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	6830
Ga0105906_1002281	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	6038
Ga0105906_1002895	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	5078
Ga0105906_1003421	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	4441
Ga0105906_1007431	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	2394
Ga0105906_1013573	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1432
Ga0105906_1014317	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → Porphyromonas bobii	1369
Ga0105906_1020507	All Organisms → Viruses	1006
Ga0105906_1045475	All Organisms → cellular organisms → Bacteria → Proteobacteria	507

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0105906_1000211	Ga0105906_100021149	F054109	MTGRPKSKKGVKVHTAFKIYPKDKERAQVMADNLDMSLSAYINKAVLEKLAHDEKSEA*
Ga0105906_1001641	Ga0105906_10016418	F101360	VMSKEDALRRAVVAAHVAKVASQEKKRALAELEEVMAPGDTSRPMIDGLQVGTVSVSAPAPKYQVVDERALVAWLEWNKPDAVHKVPAPWFTAAAALDGFIKQTGEIPDGVEVVQGDPRISVRISTAQADAIQELIASGDIRMIEVGGD*
Ga0105906_1001900	Ga0105906_10019004	F103434	VVGFRPRRGRYLENGPHVVEVTLAVVKEGRTGRRFERGETFTIDKVLVQPSAGNALKATENRVIRGDLTDETTLKVFGTGRKWPGGPHSWVKIIKGPDSLVGKTFQQAGEPLTYDASPMTRHWSVRCDTLGTESR*
Ga0105906_1002281	Ga0105906_10022811	F030786	MKRTRIHKVVFQMLVVMIVTSSLQLLLKNGSATKGGNATGAKKANKISFADITDGDKSKVVAIKVKYFDDEGADKIFENNNNRILNTINSQHISYNSQSAEYSKPRLFLLYQSLKVDC*
Ga0105906_1002895	Ga0105906_10028955	F042387	MKRIILFFMAGFFLVSCSRENDKMTDETLANSAKMQLPTKVTIAENKKVISKRFEYQNDNELKEIIDEGSGERIVFVYEKDFITSKIRYSQAGEELGKANYQYNNGKLSSVIDEVVISDSGIQYKRVVTREYHYNGSEVSVNENIKYHSESYAYNLRDENFTHTYVLNGENITKIHHEISKNVPGGYFYLNPNNMVVVDEEVTYDAKNSPYKNIKGFSVLAVEFCGLDEDENTIADYLNFRWVSHNPTLIKKLGVYDKFGQSGKGAEMLEK
Ga0105906_1003421	Ga0105906_10034214	F041827	LFFMKHFLSALALGCLLLSCNRDLENNETPAPPQKEKLVLLKQLSEGSTVTFQYKNGNEIESVNIDGVGKSDIDYEYDTYGRIVKERRFHRRYDYGETNITYQYDNQGRLVSSHAISTKFYPGTGLTPRCSVEKKHTYTYQGNKVTVKIEMGADTCSAIPETGKEKTITLLVENGRVTKTFDEQGNIEQTIEYYNTKNALRNIKGFPALVVEFYIRPLTYELPYYNLGIQRIEDLRYIDNIKTRDFHNGSYWEYRYSYDNGSTDNDYPNGVGIHARSHNDPTYDEYLYEISADRSYIKEE
Ga0105906_1007431	Ga0105906_10074311	F047127	FMKKTFAFILLSIISLAKAQLTDIRYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGERREAVRLWDKDIFYLEFTDRKMNKRVFRQMPELKKNGKLFEIMLQGDVSWYRRYFSYRADTWDANYEHEDYFVKGDEIVNIPVKGRYKKKLKALLSDKPEIAKEVDRMVGDSDIREILEKYNSK*
Ga0105906_1013573	Ga0105906_10135733	F097527	MIYFKMEKIGNSTHNKEKKTRSENLVFNTIPAAGVEPARPCGHWILSSNSMFL
Ga0105906_1014317	Ga0105906_10143171	F090517	MNRRIFALCGLLAGFLLFAYSCKKDTPRLQLSSGELKQTVWNGTLEYKDASRLTYSVYLSFVSDSIVEVSTFATTDPTAAFDSKYPCSYTMDDRILTLRTRGVLPLNVSIDRNSWYLIRKEPSLLVFQANAGNPAAEATMTLHKKL*
Ga0105906_1020507	Ga0105906_10205071	F105377	MTRRARTTVRDFDKLPLLTPEEAFERAREMGWNRPLFDHGYRGRGLESWKALETLIRQYDVEDLVIASFGLKGIEEIFDACSMLHERGWRLWQTTAKVYVGGELRTVQAIRAHYRGY*
Ga0105906_1045475	Ga0105906_10454751	F103431	IFNNDLMIDLDALVVGMLFFIQLFLQGIAWRVAIAHFLHAERGNAAAAAFDGAFRENIADCHAEDDNNKDAESQKEGFHVCIPEG*