Sample 3300008468

Basic Information
IMG/M Taxon OID	3300008468 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0111382 \| Gp0136549 \| Ga0115358
Sample Name	Sea floor sediment microbial communities from Gulf of Mexico Methane Seep - MPC10T
Sequencing Status	Permanent Draft
Sequencing Center	Shell Corporation
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300008468 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0111382 | Gp0136549 | Ga0115358

Sample Name

Sea floor sediment microbial communities from Gulf of Mexico Methane Seep - MPC10T

Sequencing Status

Permanent Draft

Sequencing Center

Shell Corporation

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	422857366
Sequencing Scaffolds	27
Novel Protein Genes	27
Associated Families	21

Dataset Contents

Total Genome Size

422857366

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	15
All Organisms → cellular organisms → Bacteria	4
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae → Thioalkalivibrio → Thioalkalivibrio nitratireducens	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → cellular organisms → Bacteria

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi

All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae → Thioalkalivibrio → Thioalkalivibrio nitratireducens

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium

Ecosystem Assignment (GOLD)
Name	Subsurface Hydrocarbon Microbial Communities From Various Worldwide Shell Locations
Type	Environmental
Taxonomy	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment → Subsurface Hydrocarbon Microbial Communities From Various Worldwide Shell Locations

Ecosystem Assignment (GOLD)

Name

Subsurface Hydrocarbon Microbial Communities From Various Worldwide Shell Locations

Type

Environmental

Taxonomy

Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment → Subsurface Hydrocarbon Microbial Communities From Various Worldwide Shell Locations

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine cold seep biome → cold seep → marine sediment
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

marine cold seep biome → cold seep → marine sediment

Earth Microbiome Project Ontology (EMPO)

Free-living → Saline → Water (saline)

Location Information
Location	Gulf of Mexico
Coordinates	Lat. (^o)	27.4	Long. (^o)	-93.2	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Gulf of Mexico

Coordinates

Lat. (^o)

27.4

Long. (^o)

-93.2

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F004052	Metagenome / Metatranscriptome	455	Y
F004928	Metagenome / Metatranscriptome	418	Y
F013484	Metagenome / Metatranscriptome	271	Y
F021240	Metagenome	219	Y
F024001	Metagenome / Metatranscriptome	208	Y
F026445	Metagenome / Metatranscriptome	198	Y
F034978	Metagenome	173	Y
F037503	Metagenome / Metatranscriptome	168	Y
F038478	Metagenome / Metatranscriptome	166	Y
F039402	Metagenome / Metatranscriptome	164	Y
F040581	Metagenome / Metatranscriptome	161	N
F044014	Metagenome	155	Y
F056324	Metagenome / Metatranscriptome	137	Y
F060598	Metagenome / Metatranscriptome	132	Y
F061521	Metagenome / Metatranscriptome	131	Y
F070269	Metagenome	123	Y
F071990	Metagenome / Metatranscriptome	121	Y
F088916	Metagenome / Metatranscriptome	109	Y
F091298	Metagenome / Metatranscriptome	107	Y
F101182	Metagenome	102	Y
F102489	Metagenome	101	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0115358_10000004	Not Available	12175	Open in IMG/M
Ga0115358_10003123	Not Available	2321	Open in IMG/M
Ga0115358_10003204	All Organisms → cellular organisms → Bacteria	4129	Open in IMG/M
Ga0115358_10004822	Not Available	1999	Open in IMG/M
Ga0115358_10005906	Not Available	1849	Open in IMG/M
Ga0115358_10006366	Not Available	1797	Open in IMG/M
Ga0115358_10006739	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1756	Open in IMG/M
Ga0115358_10008228	Not Available	1653	Open in IMG/M
Ga0115358_10010689	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae	4296	Open in IMG/M
Ga0115358_10020529	All Organisms → cellular organisms → Bacteria	1064	Open in IMG/M
Ga0115358_10025769	Not Available	934	Open in IMG/M
Ga0115358_10027828	Not Available	1057	Open in IMG/M
Ga0115358_10027867	Not Available	992	Open in IMG/M
Ga0115358_10029979	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1669	Open in IMG/M
Ga0115358_10031437	All Organisms → cellular organisms → Bacteria	967	Open in IMG/M
Ga0115358_10040450	Not Available	716	Open in IMG/M
Ga0115358_10040945	Not Available	854	Open in IMG/M
Ga0115358_10041726	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	703	Open in IMG/M
Ga0115358_10043479	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1713	Open in IMG/M
Ga0115358_10045415	Not Available	910	Open in IMG/M
Ga0115358_10067880	Not Available	514	Open in IMG/M
Ga0115358_10168603	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Ectothiorhodospiraceae → Thioalkalivibrio → Thioalkalivibrio nitratireducens	689	Open in IMG/M
Ga0115358_10170392	Not Available	578	Open in IMG/M
Ga0115358_10175512	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	897	Open in IMG/M
Ga0115358_10185816	All Organisms → cellular organisms → Bacteria	1871	Open in IMG/M
Ga0115358_10189585	Not Available	1392	Open in IMG/M
Ga0115358_10591143	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	570	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0115358_10000004	Ga0115358_1000000418	F102489	MTSSSVGSLHEREAVAEYKSRGWGVFRPQKTSVRGTQDIFNMWDLVAIKDDQLHFVQVKTKKTRGFLKKLKAWREAHPVPGVEWHLWVRLDARKSRGEKWKKY*
Ga0115358_10003123	Ga0115358_100031231	F013484	VNIQFDLSDCTLSTEDQAVXDAVNEFLALLPDDADPKPALRLAMVILEAADVAPQDDLALVAGFTQSRSLREYVQRLQEEGLSGLWDHPIPGRPAVTTQTPVEKALLRVILGTVIEEHILPDDGVLAQRVNQTLSEDRVPEAGRVTASMVETIRLRWDIQRPAVNQQLRVAQRSQVPQPDMARLGQTCAGGAFILAVLLVETGWLKLAHLLPMAAKYAVTSTQWLLTSIFAVIYGVRCAFHLDDVRDIGFALLTGRPRPLTHGTFQHLLRAIPAKDAEKFYQASAESEVQAAGEGTRRISLDGHNLPRWTRIVELVXGKIGNTGRILKAEEMVLAYDLDAHLWLGLRTYHGTKKLSKGLVEIARELLEHRGSLEGILRLFFDKGGYSGTIFLALSQESRVRFYVPAVRYANNVAQWEQLQEDDFDATPFTFDKHADWPVDQRPAYRLADTEMTLNVREGSKIVDTVTLRAVVLHDPQGEKPAERWPVVILTDDREIDARALLNEYGDHWGQETAHRIGKHDLYLDILPPGYVLKTQRDDQGELQREVTFDQTAFFLSGWLRCLVFNLMTRFAEEMGGEYTKMWAGTLLRKFIRRPATLYLVGKDLHVVFDPFPGQDELQPLLDKLNAKRTALPWLNNLVVQFSIAQDEPVHPLTEPEKRNRLXGDG*
Ga0115358_10003204	Ga0115358_100032042	F056324	MRRKAAILLMIFSFIAAFSGCAGSKIYLLDVKYLAEKKLPPVSKVVGICPFEDARKGKGKDTIGVRHRPGKHVDLLKLEGGNLSEITTQAVKDYFAEKGFEITDCKGWDKSPEGLDRLPKDLSLVIGGKIDSFMVEAKSGITITDIQYRVKMEVLIGQIGERKVVTRTIESAPKSKKMGFDPDKVKAELNSILTEVIQNLFK*
Ga0115358_10004822	Ga0115358_100048223	F039402	MSLVDYSDLEQKIKDAPEPKILPRGSEVRARIIAVRSGISDKNNCQWYQPVFDVPDDPMVIXFNAFXWDLXXARRXXSTXSKXXRXXXXFXXFAAAXGXDXXRPFXWDDDLLGLEGWMILGVKKDDEYGDSNTVKKYVVGK*
Ga0115358_10005906	Ga0115358_100059063	F071990	MAEPTTRFRLIPQATAVADLNTPAKRLAAIAGESVVSTGIGNEADFGTIDISGGAENSSVLTILWDVTADGGNTLAETFKLWLSDNGFDQAASVIKVQPLSGADQGGAALTENYKANAGTGDYTFASMVEAEPGAINIWPTDEGTSIVLDAVAPCGDDVIFWAMYAAIAAGETTGTYKGTDAGMELQFSFKYSYS*
Ga0115358_10006366	Ga0115358_100063662	F013484	VNAQIDLSDCTLSTENQAVVGAVNEFLAWLPDDADPKPALRLAMAILEAADVAPQDDLGQATGFTQSRSLREYIRRLREEGLSGLWDHPIPGRPAITTRTPVEKALFQVILSAVIEEHTLPDDDTLAERVNQALSEEQVPEAGRVTDSMVETIRLRWGIRRPALTRQLRAAQETDTSGTDSARLGQTCVGGAFILAVLLVETGWLQLTHLLPMXAGYTVTATQWLLTAIFSVIYGIRRAFHLDDVRDIGFALLTGRPRPLTHSTFQHLRRAIPAKDAKKFYQASVELEVQASGEGTRRISLDGHNLPRWTRLVELVKGKIGNTGRILKAEELVLAYDLDSHLWVGLRAYHGTKKLSKGLVEIVRELLDHRGSLEGLLRLFFDKGGYSGQIFLVLSEESRVHFYTPAVRYASNVAQWEKLQESDFDKEPFTFDKHADLPVEQRPIYRLADVEMTINVREGNKVVGTVTLRAVVLHDPQGEKPAERWPLVLLTDDSEIDARALLDEFGDHWGQETAHRIGKHDLHLDILPLGYVLRTHRDDQGQLQREVEYDQTAFFLSAWLRCLVFN
Ga0115358_10006739	Ga0115358_100067394	F024001	MHKGSHKNKFTILSVEAPDWQGAKAQEYQVIPSFRNAARQDASALKM*
Ga0115358_10008228	Ga0115358_100082282	F071990	MAEPTTRFRKVPQSTTTAALDTAGERLAAVSGEAVVSTGAGNEADFGTVDISGGAANSGVQTILWDVTADGGNTLAETFKLWLSSNGFDIAGSICKVQPLSGGDQGAPSLTENYIANAVVGSYTWATMVESEPGAINLWPSDEGTSMALSTASDDVIMWAMYLAIANGETTGTYKGTDAGYELQFSFKYSYS*
Ga0115358_10010689	Ga0115358_100106892	F038478	VHKEIMTDKTLNETLQKKHPDFTGELIDFDFGPNKIQIQATIVKELLEIDEEKATQAFEGLCQSFSEVCSKYHIKFDPIDLFILVDDELKRGTSTKFRDVNNGNLFAEISIPTKDFQMHEYWKYSFLHELGHSWFSIEFSPEDMKYGHEDLFIDLVVICTFRKILPSYKRVYQEVRKHRTYFLTQQSKRFIGKELYRQILXDPEAYLRDLQQKIDSAHT*
Ga0115358_10020529	Ga0115358_100205291	F060598	RIVELTKGKIGNTGRILKAEELVLAYDXDAHLWLAVRVYQGTKKLSKGLVEIVRELLHHRGQLTGLLRLFFDKGGYCGQIFRTLADCPNVHFYTPAVRYSTNVKQWEQLKDADFDLEPFVYDKHADLPAKERPMYRLADTETTINVREGHKVVGTVTLRSVVLHDPQGEKPAERWPIVILTDDRKIDARVLLNEYGDHWGQEFAHRIGRHDLCLDILPPGYVLKTWRDDQGELHREVEYDQTAFFLSAWLRCLVFNLMTRFAQAMGGEYIKMWAGTLLRKFIRRPATLYLIGKELHVVFDPFPGQEELQPLLDKLNAKRTALPWLNNLVVQFSIAQDEPLHPLTEPEKRNRLFG
Ga0115358_10025769	Ga0115358_100257692	F034978	MXXXINATRDQIEEFKSSVLWSDIVKELKNWSIGFNSEMMSIVDNSADDNPSTASVLLHMGDLNGRQKAVDYLLSIPDVFLSILETKETKEGETDGE*
Ga0115358_10027828	Ga0115358_100278281	F021240	MLDFNNSQSKIVNIDREGKALQRCNLSARPMPEDGQGHVLSHMLLPSRSSFGYKAINLLSWCKAPIRVKQAKSSAPVGHM
Ga0115358_10027867	Ga0115358_100278673	F044014	MSTDYRPRFSFEISWEQKARADRVLSTYGLRKAVFGKILDDVLDLIEEYGGAAMGVMMSDATKPRDIIPSMHRAEEVGKR*
Ga0115358_10029979	Ga0115358_100299791	F026445	MISVNETKQKRQNRTVTLHLGNTLAEYQEMISTEEGMQTLIQQVEIADSLNWGHLADGHHXGCPRCLRFTHHDDYTRWAKHFDGTQELVTIIRVRCLDCEAVFTIQPSFIVRYKRYDTDAMEKFMVLLFITEDSYRMAGVSQALGMDTHQEGTWVALEKADQDAISPTSLWGLVQWXGQLSPAQLNLALGVEPPTHIIEDEKHMKECGEKVYVPIVYAPREALIWWTDYIDSVSEDALLSSLERFKAISERLAHIVGANVDGWDPAQKALREAFPGITLAECHLHAMIKLGQHLATFKRQRKAMGQPVSEQEETQIRAAFVRVLQAPTPTAYQKALDDLPNVFDNEPLASRKDSLVTKQALFQAWTTDANLAVVSTPLDQCMKFLNRKQDNMQTLHGPKSGLATVNAWAITRNCWRFLKGALRAGLSPLELAGANFLGIPWMQL
Ga0115358_10031437	Ga0115358_100314371	F037503	MLLGAASSISVIEVELLIRLGGFTAYQTLTNSECYDIYSGVRRWVLRSGAERERTQNIS*
Ga0115358_10040450	Ga0115358_100404502	F034978	MEVGINATRDQIEEFKSSILWSDIVKELKNWSIGFNSEMMSIVDNSADDNSSTASVLLHMGDLNGRQKAVDYLLSIPDVFLSILETKEIKEGEIDEE*
Ga0115358_10040945	Ga0115358_100409451	F101182	MRRYYMNSYEEGLQYERKMDRISEQIEELMLDAMITALXKIKDRNLFYSDVESRPQNDPYPF*
Ga0115358_10041726	Ga0115358_100417262	F070269	LGLFTVSRRGGYIWQVSQLVAEHELQKELAPIGVDGPSLLLEKEAKEENIRFAPL*
Ga0115358_10043479	Ga0115358_100434793	F071990	MAEPTTRFRLIPQATTIAELDTPGERLAAIASESVVSTGAGNEADFGIIDISGGAANSSVLTLLWDVTADGGNTLAETFKLWLSSNGFDQAGSVLKVQPLCGDDGTDILTEKYIMNAVVASYTWATMVESEPGAINLWPSDEGTSIVLDAAPPCGDDVIMWAMYCAIAAGETTGTYKGTDSGYELRFSFKYSYS*
Ga0115358_10045415	Ga0115358_100454151	F040581	NGNFNGIKFIGNGNVYNGYLNQEQTWKEYRQWALENIY*
Ga0115358_10067880	Ga0115358_100678801	F004052	MRILTTIVFLALTVLLFSCDQRNSASDVDPKLGLECFESHRAALPPGTQYEGIEKLADNRLTIKTMNGIEVVTLDCELNPDGTLRNHDK*
Ga0115358_10168603	Ga0115358_101686031	F004928	MGQALHSIESELDHTVEIVVHITETLGEQRRGDLVAALEDSGGITTAEFCPLRYHLMLVRYDRDLYSSQDVLNRVTSQNVN
Ga0115358_10170392	Ga0115358_101703921	F071990	GLGNEVDFEEIDISGGAANSSVKTVLWDITDDGGNTLAQTFKLWIPAASIGFDVAASVVKVQPLSGDNPGPGVNTEDYVVNGVVGSYTWATMVESEPGAINVWPSDEGTSMALPGTNGASDDVVFWAWYLAIADGETTGIYKGTDAGMELQFSFKYSYS*
Ga0115358_10175512	Ga0115358_101755121	F091298	MSSAARLRVTSPVQVLEHLSLGEPIQDTRVAGLLDLDPLVVSRWLCGEDLRGIYQPILLRHCALDGLDLEGRTFYEMVELVGCRVGVAHCTRAYFYSSLLIEDCVFXGDFXGRGIQSDGRMVIHNTVFTGWADFSTINLRGRVDLVDLSFPGGTNLLHVLVND
Ga0115358_10185816	Ga0115358_101858164	F088916	MPSTIFDNVKGSDFPKIWADKINIISNKTYTVIVQPQEERQSLQKIMSEISGKAKTRGMTPDVLENILGEKIKHIL*
Ga0115358_10189585	Ga0115358_101895851	F039402	TMSLVDYSDLEQKIKNAPEPKILPRGSEVKARIIAVRSGISDKNDCQWYQPVFDVPDDPMVIEFNAFFWDLIDAEGKVDGKQVERNMSSFNCFAAAFGIDLSRPFNWDDDLLGLEGWMILGVKKDDEYGDSNTVKKYVVGK*
Ga0115358_10591143	Ga0115358_105911432	F061521	MNEALIRIEIERIVNLVAGFGWAKVEEKVEAGQVSITLRKTLPI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300008468: Sea floor sediment microbial communities from Gulf of Mexico Methane Seep - MPC10T

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences