3300008455: Human stool microbial communities from NIH, USA - visit 1, subject 686765762 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008455
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053280 | Ga0115313
• Sample Name: Human stool microbial communities from NIH, USA - visit 1, subject 686765762 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 64551292
• Sequencing Scaffolds: 4
• Novel Protein Genes: 5
• Associated Families: 4

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Tannerellaceae → Parabacteroides → unclassified Parabacteroides → Parabacteroides sp. D26	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides fragilis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → unclassified Roseburia → Roseburia sp.	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051936	Metagenome	143	N
F062845	Metagenome	130	N
F097172	Metagenome / Metatranscriptome	104	Y
F101356	Metagenome	102	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0115313_101701	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Tannerellaceae → Parabacteroides → unclassified Parabacteroides → Parabacteroides sp. D26	5979
Ga0115313_101863	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides → Bacteroides fragilis	5489
Ga0115313_109531	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae → Roseburia → unclassified Roseburia → Roseburia sp.	1195
Ga0115313_114424	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	800

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0115313_101701	Ga0115313_1017017	F051936	ETGQVLFSPLALRGKAFGFSVLQEHAVMTPIISIFFVMLIIRYLSIHISIKK*
Ga0115313_101863	Ga0115313_1018631	F051936	EQVLFFPLALRGKAFGFSVLQKHAVMTPVISIFFEMLIIRYLYIHISIKK*
Ga0115313_109531	Ga0115313_1095311	F097172	MLKKLMCAVLTAVCVATAVVPAMADDVITAEAATKKVTSAYKYHLEGYDKNGYPVSGFSKTSFYKDLNSLPAVKTGKTTINVPAITSSVKSISKEKGNPRYKSFVKFKAPKTGKYVFTIDNLQGTDDKSLKCMADGDLCQISKTCKKYGLDGVEDSDTVGKYDTLYENNYLARLRTILDNYKAEHPEYADVIEETYEYKTDFVNKYPVNKIKFTTKLKKGQTYVFVIDNIGMQKAVPPYFTTHGSNEQSCLWGGNYLAAYSFDMNIEYKK*
Ga0115313_114424	Ga0115313_1144241	F062845	MKKTPFILHEKFRSDNNEQRKEHFQKKFERYIVDELSNTAPSKSCA*
Ga0115313_119943	Ga0115313_1199432	F101356	EKDGLSNSKFATTKIKSEGKRSVLLYRSSSSQWAPFAIRVSCISTGEPLSDFCVYIAGNTMELQDSTKVYVKYLYGQPNSDTYLKMKYETDHRISIYLTSDNSLGDRTIVRELIVRDSMYDMATQDDEITGLADCTIMQ*