3300008413: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 765620695 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008413
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053259 | Ga0115229
• Sample Name: Human buccal mucosa microbial communities from NIH, USA - visit 1, subject 765620695 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 50778842
• Sequencing Scaffolds: 13
• Novel Protein Genes: 14
• Associated Families: 13

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctSdk10	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Buccal Mucosa → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027205	Metagenome	195	N
F030786	Metagenome	184	N
F036281	Metagenome	170	N
F054109	Metagenome	140	N
F054110	Metagenome	140	N
F059076	Metagenome	134	N
F061926	Metagenome	131	N
F064819	Metagenome	128	N
F068942	Metagenome	124	N
F077781	Metagenome / Metatranscriptome	117	N
F097490	Metagenome	104	N
F097527	Metagenome	104	N
F098763	Metagenome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0115229_100002	All Organisms → cellular organisms → Bacteria	233780
Ga0115229_100258	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	13794
Ga0115229_101270	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	4201
Ga0115229_103252	All Organisms → cellular organisms → Bacteria	2135
Ga0115229_103554	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	2013
Ga0115229_104254	All Organisms → Viruses → Predicted Viral	1771
Ga0115229_104377	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1739
Ga0115229_105739	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1407
Ga0115229_105861	All Organisms → cellular organisms → Bacteria	1384
Ga0115229_116565	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctSdk10	638
Ga0115229_116650	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	635
Ga0115229_117199	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	619
Ga0115229_121732	Not Available	511

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0115229_100002	Ga0115229_10000262	F054109	MVGRPKSKKGVKVHTAFKIYPSDKERVQSMADKVGMSLSAYINKAVLEKVERDEKSEA*
Ga0115229_100258	Ga0115229_1002581	F027205	LSLIERTHVASRLIVSADDILKAVKESEEFERKALSEARKRDRAEGKEPRETLYPNPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEKDLFAFMDYLLDEYDIPRRIKRSTK*
Ga0115229_100258	Ga0115229_1002582	F036281	MITLIKVDEGPVDIYELRMQYLAKLKQTDGVMLPTFIYRNKDLFVTEFKPTCDDQWIMYMTNAEGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWSAREGRPAPFFYESRQYHVKSFMRVPGSTDLWITAERETGHWYTFRMSDAHKSKFTRHTMTNEKGHQSYDWVLENVEWAADTIRYF*
Ga0115229_101270	Ga0115229_1012703	F030786	MKRTKIHNVVFQMLVVMIVTGSLQLLLKNGSTVKGGNATGAKKISLADITGGDDSETGVLKVKYFDDEGADKIFENNNNRILNTINSQHISYNSQSAEYSKPQLFLLYQSLKVDC*
Ga0115229_103252	Ga0115229_1032521	F068942	MIRKILSLPTLALCFTLCTALFAGCGENNEGFVTKVRWSNVKNPKYGDDINITLKAEGETFTTVGDHSQIFFGYDASTLDTFTRHRFPKVDKDTAYYKDIVIYLTRNESKGTATLKLVAPPNRTQQPKQFDFSIEV
Ga0115229_103554	Ga0115229_1035542	F059076	MTNKILLLGLLLGGVSINAQVINETKAAGKTGQKVGINTNIPTRTLTIKNSTANDGKPLIRLVDAPIYSKNVKSAMDADLGGNTANSTNYTDYRPLVVDKVGDVYQGLPINNMSILTLTISNVNGDYIRKFDTGIDYKKYAVTIMNAIFKMPDPGAGKIVMMRAGNGVIPSVDFGGGKYGVTTAPATVLLKKTQHTNNWEIYADYPNIGSYEFSIGSTSAGNVVNGTWVITLLVGKRDAVNFTEINFNQGGSAEGIGNSNTTYATQLQDFLQKLE*
Ga0115229_104254	Ga0115229_1042541	F054110	TAANPEHEVAEGMVDVNYQPTIRKLLTALRMNGRRYVVDTRQSWSKYDKPCKVYIVSRMYNEEEYKLAFPEKYKKGKTFKQGQLYKKESEYSSTKQHEVLLFLVKTYKGGE*
Ga0115229_104377	Ga0115229_1043773	F064819	MILKDNQGKDRIKFSDIVRLNKEEPVFVKMKMRISTETMVSEENLDIERSDLEDLTRNLKDLSECKIRKFFFQNIDETIEIVFSINDIGTIAVEGKMYDESYMNSINFSFQTDLNGIAIFSKEISQELEKYK*
Ga0115229_105739	Ga0115229_1057393	F097527	MIYFKMEKIGNSTHNKEKKTRSENLVFNTIPAAGVEPERP
Ga0115229_105861	Ga0115229_1058612	F061926	MIKTAKHIKTFLASVLLLIFVMNVSGLFVRLHHQETHQKTEKIAECSDKVCYHKAHLQTKSDCDCGFLCTLNYFYILPEKPQTEIHVNEYFSYFSLYKIFVSERIILLWQSRAPPVLS*
Ga0115229_116565	Ga0115229_1165652	F027205	LSLIERTHVASRLIVSADDILKAVKESEEFEKKALSEARKRDRAEGKEPRETLYPSPDLKPGREIVLDYIKNPERRRTPRCSVHLEKRTANNSYRFIVDVSQVRNRELADEIEQDLFAFMDYLLDEYDIPRRIKRSTK*
Ga0115229_116650	Ga0115229_1166501	F098763	MDRRTSLRILSPALHLAMKLFEAVVRTTISYDPSDEVEGKRGMNAIPTAVDE*
Ga0115229_117199	Ga0115229_1171991	F097490	MKIDENKKEVLVEIRNNTENNYYLLSPIVSIMTKHLQYIDGEMIEGQIHHKKLDSIVCSVCIWDDICKEEYYAMRDIVLLPKKSVKKIKYKYDNEEYIEIETVHIGFPYNGYYNEIGKKMQFMLKKKLDSSNIIK
Ga0115229_121732	Ga0115229_1217321	F077781	PPIAAPARPAPAHLKAPAAVTGGWGSPRQNDFFILLTLESPAPCDPLQTESHLVFRTRIHSQVQWGDVRGVAGRTKDSLPSDSVCTVGPRAGALSVRTADSLYLGFPRPHPGTPGLGGFWPFLALQSLSETPSHARMPRVTVARTSPGTLEISPLRAAPRNHTSPRHTRA