3300008409: Coastal sediment microbial communities from intertidal sand flat, Janssand, Germany_1868_binC

Overview

Basic Information

• IMG/M Taxon OID: 3300008409
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118458 | Gp0136319 | Ga0114885
• Sample Name: Coastal sediment microbial communities from intertidal sand flat, Janssand, Germany_1868_binC
• Sequencing Status: Permanent Draft
• Sequencing Center: Max Planck Institute for Plant Breeding Research
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 22339067
• Sequencing Scaffolds: 7
• Novel Protein Genes: 9
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	4
All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Spirochaetales → Spirochaetaceae → Alkalispirochaeta → Alkalispirochaeta odontotermitis	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Coastal Sediment Microbial Communities From Intertidal Sand Flat, Janssand, Germany
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Coastal → Sediment → Sediment → Coastal Sediment Microbial Communities From Intertidal Sand Flat, Janssand, Germany

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): marine benthic biome → coastal water body → intertidal sediment
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Sediment (saline)

Location Information

• Location: Janssand, Germany
• Coordinates
  • Lat. (^o): 53.736
  • Long. (^o): 7.6989
  • Alt. (m): N/A
  • Depth (m): .02

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011939	Metagenome / Metatranscriptome	285	Y
F024001	Metagenome / Metatranscriptome	208	Y
F040630	Metagenome	161	Y
F042909	Metagenome	157	Y
F059979	Metagenome / Metatranscriptome	133	Y
F059980	Metagenome / Metatranscriptome	133	Y
F072360	Metagenome / Metatranscriptome	121	Y
F087950	Metagenome / Metatranscriptome	110	Y
F093888	Metagenome / Metatranscriptome	106	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0114885_10160	All Organisms → cellular organisms → Bacteria	6822
Ga0114885_10389	All Organisms → cellular organisms → Bacteria	11681
Ga0114885_10421	All Organisms → cellular organisms → Bacteria → Spirochaetes → Spirochaetia → Spirochaetales → Spirochaetaceae → Alkalispirochaeta → Alkalispirochaeta odontotermitis	12639
Ga0114885_10813	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	85567
Ga0114885_10817	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	91003
Ga0114885_10823	All Organisms → cellular organisms → Bacteria	104344
Ga0114885_10829	All Organisms → cellular organisms → Bacteria	115973

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0114885_10160	Ga0114885_101603	F087950	MQYWINGPASGGIDDKIKMVNILLKTNIPSFHHSIIPFPG*
Ga0114885_10389	Ga0114885_103893	F072360	MNSNLNILNAFSRKALRIAFILLIGFSFSAGGALAKDCPGGPGCLICAAAVHPRIPGMDVEMVNRGCASAEQNSSCGLETGRRADELDRMAAVAESGTQQPYPGIFSAAPAEFDQAHLHPGFITQSQYPDRGELTPIYLLNQSLLC*
Ga0114885_10421	Ga0114885_104219	F024001	RINKFTILDVEAPVWQGAKTQEYLDIPSFRNAARRDASAYKM*
Ga0114885_10632	Ga0114885_106328	F040630	LGQINPKLQYPNLKKIKYQLFGILNLGHCDLPFDLAQGGESFDSAQDREPVERLVEPFGICDLLFEIS*
Ga0114885_10813	Ga0114885_1081349	F059980	MEEAFLMGFSGGFEQGKPATALPELINFISINIERVNP*
Ga0114885_10817	Ga0114885_1081737	F059979	MKSFLFILAQLTLVTIVYAFAYRAGYREAQSKAMSVVKKFADPVTCLLDQLNESVEEAKKAEHEDEAKK*
Ga0114885_10823	Ga0114885_1082369	F093888	MIYNFFNQLANASGLPLIVSIGALVTMVSLTLFGSLILIKIRSIINVLNNLNDRLDAIGQRLGWQSWETENIQPDKYKSGSHIHTEVAADGRKAIETHNSANIAKNNGSEIHRLNTEVSTKIQELLKESGNPTPYHDLTKQLSREYPGCNYDFFLKEAEKLQKEGKVEVQLIAGKLYFQLKNT*
Ga0114885_10823	Ga0114885_1082370	F042909	MVELLTFIGSLNLGIFIVLWTSTIILLIFITLLFVFVSQMNKKTININKKVKILIEALSEKE*
Ga0114885_10829	Ga0114885_1082931	F011939	MPKMTVELIEETLRKEVRKIDKSVKVVAVEQSKKTDFYRVTLIKEGKSGSAELKKEVIEQYLAQGGKGKALSRALGKAVSHLSISYKR*