3300008403: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 764042746 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008403
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053232 | Ga0115182
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 764042746 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 85103634
• Sequencing Scaffolds: 11
• Novel Protein Genes: 11
• Associated Families: 11

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2	1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Aggregatibacter → unclassified Aggregatibacter → Aggregatibacter sp.	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1
Not Available	1
All Organisms → Viruses	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030786	Metagenome	184	N
F040685	Metagenome	161	N
F051214	Metagenome	144	N
F061927	Metagenome	131	N
F073671	Metagenome	120	N
F085821	Metagenome	111	N
F092231	Metagenome	107	Y
F097526	Metagenome	104	Y
F097527	Metagenome	104	N
F105377	Metagenome	100	Y
F105380	Metagenome	100	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0115182_100002	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Siphoviridae sp. ctHip2	328368
Ga0115182_100141	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	43928
Ga0115182_100602	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Haemophilus	15940
Ga0115182_102507	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales	5080
Ga0115182_105316	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pasteurellales → Pasteurellaceae → Aggregatibacter → unclassified Aggregatibacter → Aggregatibacter sp.	2585
Ga0115182_107441	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1860
Ga0115182_109326	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1480
Ga0115182_117543	Not Available	814
Ga0115182_119922	All Organisms → Viruses	725
Ga0115182_128823	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia	509
Ga0115182_129151	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	503

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0115182_100002	Ga0115182_100002272	F105380	MEGRQTQYNINLADLDDQISDGIVYADRSGKMIYKFGAKKIIQTAITKDLTITGLDDEFKMDYYSFWVPDIYLISFKSFNPDGGLYLAYHKKDEKHIYLTNIWPDSRNQDDTYFPNGKRLETKSICTGRMMDDIDSAEYSAWKNDPVTRASQYINKFINARGNADLDFVNSTLRRKVPNHNTKKFAEFLGSITKEQENVNTYEEFIEWTKTTEWFK*
Ga0115182_100141	Ga0115182_10014153	F051214	MPGKIVAHDTHLRIDTEFIELKDCFEAFRRGVEYREKNDVDDILVICNAPDIIEYQLKNGDSFIVTYDPIHRIIVMRVFLHDEDITVKPIYIYNNREYQIACEFLRQVMHDKIDLKDEWIA*
Ga0115182_100602	Ga0115182_10060219	F073671	MNKEQAEHELAELHEKERSLEKALELVRERIRETINYTNKNKAAR*
Ga0115182_102507	Ga0115182_1025077	F030786	MKRTKIHKVVFQMLVVMIVTSSLQLLLKNGSATKGGNAMGTKKANKISFADITDGDKSKVVDIKVKYFDDEGADKIFENNNNRILNTINSQHISYDSQSAEYSKPQLFLLYQSLKVDC*
Ga0115182_105316	Ga0115182_1053163	F061927	AMFILGACSRDSAQKATEKIKNAYSDGLRKTFIEEGVKSCIENSGLKESEAREYCECAMNKLNESLSNDDIVDISMDNSPKDLDDRIEKAISSCIGE*
Ga0115182_107441	Ga0115182_1074412	F085821	MNHIFEQLAPLAETKKQQTTVAKFIEKGFKFTRQPDVQKFKLLTADFFVAGNMPAVQLCLDYLVAQGYPTAENEKQFLNWVFMEPIYYLKYFISDTSTQKKLHHDLLNLWYECSKRQLLEQDKGKHDEAYIDTWNEANVNKTLSIIRSGETIASRKEDVAKHSKTLNDEYDQNVNLLYEYCRALLYTAETTQSQQELVAETQSHIALLKDLYKKVNKIK*
Ga0115182_109326	Ga0115182_1093261	F097527	MIYFKMEKIGNSTYNKEKKTRSENLVFITIPAAGVEPARPCGHWILSLILLVLN
Ga0115182_117543	Ga0115182_1175431	F097526	HIRAFAADGSQALLKRLTEGLRIAGEMEKAGRNGHPDPAEQARRERWDCQFTVLQQQARMAHCEIVNADNAAVSRLTRQCEKNGSCDTAIPLPRDDYGFAAALRDFPLNEHQTALLWRMALLTIAEITDATPSLVAHYLNGIGGEHLGRALAGNTVYPVTVVSNLAWLLHEQQKSGQLQRDLWHSAAALGSGDAEVREKPQ*
Ga0115182_119922	Ga0115182_1199222	F105377	VRAEVRDFNELPLLTPEEAFERAREMGWNRPLFDHGYRVRGLADWKAIETLLRQYDAEDAVIASFGLKRFEEIFDALAMLSERGWNLWQTVANVYVGGELRAVPAIRA
Ga0115182_128823	Ga0115182_1288231	F092231	IFFKIYNIMIIFHPQEFITWTNALIQFPWPTQVNEFPPYAEKLGWKPTLRPTWFNVKANNDTRNVILGDDRSGNVRDLFLSMARNEAEDDEGAAELNDHFVSCVAAGRKAWGEPFLLEAGDGPGVTWRFPGDMFAQVTGGFTAVLFNFFTPEGRRQFL*
Ga0115182_129151	Ga0115182_1291511	F040685	EVHIFGGMALYSSHYTINSLKKEFSAKPLMGQNEDLPKEISLPNTPKNWEAFTKKINLDKFKKLRDGPSQQAFDGQDEVIIIKTNKKTYRKMNAFGNDHDRETWYDLLQIIAKEFGKKSIYE*