3300008364: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 763577454 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008364
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053211 | Ga0114890
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 763577454 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 105224851
• Sequencing Scaffolds: 9
• Novel Protein Genes: 9
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus parasanguinis	1
All Organisms → Viruses	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Euarchontoglires → Primates → Haplorrhini → Simiiformes → Catarrhini → Hominoidea → Hominidae → Homininae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045567	Metagenome	152	N
F077781	Metagenome / Metatranscriptome	117	N
F084342	Metagenome	112	N
F097525	Metagenome	104	N
F097527	Metagenome	104	N
F101359	Metagenome	102	N
F103431	Metagenome	101	N
F103434	Metagenome	101	N
F105377	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0114890_102489	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus → Streptococcus parasanguinis	6379
Ga0114890_112625	All Organisms → Viruses	1434
Ga0114890_114520	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1251
Ga0114890_115351	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium	1184
Ga0114890_117873	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1026
Ga0114890_120991	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	883
Ga0114890_125401	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	739
Ga0114890_134827	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Mammalia → Theria → Eutheria → Boreoeutheria → Euarchontoglires → Primates → Haplorrhini → Simiiformes → Catarrhini → Hominoidea → Hominidae → Homininae	547
Ga0114890_134833	All Organisms → cellular organisms → Bacteria → Proteobacteria	546

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0114890_102489	Ga0114890_1024891	F097527	MIYFKMEKIGNSTYNKEKKTRYENLVFITIPAAGVEP
Ga0114890_112625	Ga0114890_1126252	F105377	VRAEMRDFDKLPLLTPEEAFERAMEMGWNRPLFDHGYRVRGLNDWRAIETLLRQYDVEDAVIASFGLKRFEEILDAFAMLHERGWRLWQTSANVYVDGELRAVPAIRAHYRGD*
Ga0114890_114520	Ga0114890_1145202	F101359	MKKFLSKRSILVGALALVLGFIVSSCSRDKDDDAIYTAKLQVQHHSNNSRNSTANGSVTYRDANGNKRKIYLRSGMSESISFEVNKGFKSFVEVKATDIYGNLFVKWTVTKTYTGARVQNWSTSFTSYTGQRQSFTDSYKETVK*
Ga0114890_115351	Ga0114890_1153512	F097525	MQQKKIMFKIQNAHQKIIFSIHGHRERKDNFEDWLKVEVKVKDDLEGKYYTRVSECMLFSEVLGLLEWFEQISADKEKSTEIDFIEPELAFEYQNKKLTVLLCYDIAPVSYGKEPYQLTFSLDDKTLAMIIKELGEAVASFKKK*
Ga0114890_117873	Ga0114890_1178732	F084342	VFLLGGYLAVPIRRPFFAQSLKKTLGQERGLGDAYDKDYQNEKALQWIHQRHILGICKEE
Ga0114890_120991	Ga0114890_1209911	F045567	VHTSTHRVEDALLAVDGDILTPRDGTYIVQTERVVVVLVSQEDRIDTIDTETCGLVVEVRATVDEDTLPALGDDEGRGAPTTVTSIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHGKEIPSLSSERGCVVERVVR*
Ga0114890_125401	Ga0114890_1254012	F103434	RAVVKEGRTGRRFERGETFTIDKVLVQPSAGNALKATENRVIRGDLTDETTLKVFGTGRKWPGGPHSWVKIIKGPDSLVGKTFQQAGEPLTYDASPMTRHWSVRCDTLGTESR*
Ga0114890_134827	Ga0114890_1348272	F077781	PPIAAPARPASAHLKAPAAVTGGWGSPRQNDFFILLTLESPAPCDPLQTESHLVFRTRIHSQVQWGDVRGVAGRTKDSLPSDSVCTVGPSAGALSVRTADSLYLGFPRPHPGTPGLGRFWAFLALQSLSETPSHARMPRVTVARTPPETLEISPLRAAT*
Ga0114890_134833	Ga0114890_1348332	F103431	MLFFIQLFLQGIAWRIAIAHFLHTERGNAAAAAFDGAFGENIADCHAEDDKDKDTESKEEGFHVCIPEG*