Sample 3300008340

Basic Information
IMG/M Taxon OID	3300008340 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0111382 \| Gp0136553 \| Ga0115359
Sample Name	Sea floor sediment microbial communities from Gulf of Mexico Methane Seep - MPC10B
Sequencing Status	Permanent Draft
Sequencing Center	Shell Corporation
Published?	N
Use Policy	Open

Basic Information

IMG/M Taxon OID

3300008340 Open in IMG/M

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0111382 | Gp0136553 | Ga0115359

Sample Name

Sea floor sediment microbial communities from Gulf of Mexico Methane Seep - MPC10B

Sequencing Status

Permanent Draft

Sequencing Center

Shell Corporation

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	310096569
Sequencing Scaffolds	23
Novel Protein Genes	25
Associated Families	15

Dataset Contents

Total Genome Size

310096569

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	12
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → unclassified Anaerolineales → Anaerolineales bacterium	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	2

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

Not Available

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria

All Organisms → Viruses → Predicted Viral

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi

All Organisms → cellular organisms → Bacteria

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → unclassified Anaerolineales → Anaerolineales bacterium

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium

All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium

Ecosystem Assignment (GOLD)
Name	Subsurface Hydrocarbon Microbial Communities From Various Worldwide Shell Locations
Type	Environmental
Taxonomy	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment → Subsurface Hydrocarbon Microbial Communities From Various Worldwide Shell Locations

Ecosystem Assignment (GOLD)

Name

Subsurface Hydrocarbon Microbial Communities From Various Worldwide Shell Locations

Type

Environmental

Taxonomy

Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment → Subsurface Hydrocarbon Microbial Communities From Various Worldwide Shell Locations

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	marine cold seep biome → cold seep → marine sediment
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

marine cold seep biome → cold seep → marine sediment

Earth Microbiome Project Ontology (EMPO)

Free-living → Saline → Water (saline)

Location Information
Location	Gulf of Mexico
Coordinates	Lat. (^o)	27.4	Long. (^o)	-93.2	Alt. (m)	N/A	Depth (m)	N/A
Location on Map

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Location Information

Location

Gulf of Mexico

Coordinates

Lat. (^o)

27.4

Long. (^o)

-93.2

Alt. (m)

N/A

Depth (m)

N/A

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F013484	Metagenome / Metatranscriptome	271	Y
F026445	Metagenome / Metatranscriptome	198	Y
F034978	Metagenome	173	Y
F036294	Metagenome / Metatranscriptome	170	Y
F038478	Metagenome / Metatranscriptome	166	Y
F039402	Metagenome / Metatranscriptome	164	Y
F044014	Metagenome	155	Y
F061521	Metagenome / Metatranscriptome	131	Y
F071990	Metagenome / Metatranscriptome	121	Y
F075043	Metagenome / Metatranscriptome	119	Y
F083361	Metagenome / Metatranscriptome	113	Y
F086602	Metagenome / Metatranscriptome	110	Y
F088916	Metagenome / Metatranscriptome	109	Y
F091298	Metagenome / Metatranscriptome	107	Y
F101182	Metagenome	102	Y

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0115359_10000052	Not Available	9624	Open in IMG/M
Ga0115359_10000852	Not Available	3590	Open in IMG/M
Ga0115359_10001981	Not Available	2959	Open in IMG/M
Ga0115359_10002405	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophobacterales → Syntrophaceae	4702	Open in IMG/M
Ga0115359_10003316	Not Available	3662	Open in IMG/M
Ga0115359_10003580	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2296	Open in IMG/M
Ga0115359_10003802	Not Available	2301	Open in IMG/M
Ga0115359_10007132	Not Available	2018	Open in IMG/M
Ga0115359_10007251	All Organisms → Viruses → Predicted Viral	1718	Open in IMG/M
Ga0115359_10012579	Not Available	2290	Open in IMG/M
Ga0115359_10017406	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2031	Open in IMG/M
Ga0115359_10018327	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2801	Open in IMG/M
Ga0115359_10025669	All Organisms → cellular organisms → Bacteria	950	Open in IMG/M
Ga0115359_10034867	Not Available	792	Open in IMG/M
Ga0115359_10040353	Not Available	1417	Open in IMG/M
Ga0115359_10043452	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales → unclassified Anaerolineales → Anaerolineales bacterium	689	Open in IMG/M
Ga0115359_10050108	Not Available	765	Open in IMG/M
Ga0115359_10063705	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	521	Open in IMG/M
Ga0115359_10162999	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	814	Open in IMG/M
Ga0115359_10165988	Not Available	733	Open in IMG/M
Ga0115359_10430631	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	568	Open in IMG/M
Ga0115359_10432769	All Organisms → cellular organisms → Bacteria	986	Open in IMG/M
Ga0115359_10460926	Not Available	679	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0115359_10000052	Ga0115359_1000005210	F071990	MAEPTTRFRLIPQNTAVADVNTPAKRLAAIAGESVVSTGIGNEADFGTIDISGGAANSSVLTILWDVTADGGNTLAETFKLWLSSNGFDQAGSVLKVRPLSGADQGGPSLTENYKANAGTGDYTFASMVEAEPGAINVWPSXEGTSMALSTDSDDVVFWAMYAAIAANETTGTYKGTDAGMELQFSFKYSYS*
Ga0115359_10000852	Ga0115359_100008522	F061521	MKPALIRIEIERIVNLVAGFGWKKTEEKVSPDKVSITLTKEVPPTIEE*
Ga0115359_10001981	Ga0115359_100019812	F013484	VNIQFDLSDCTLSTEDQAVVDAVNEFLALLPDDADPKPALRLAMVILEAADVAPQNDLALVAGFTQSRSLREYVQRLQEEGLSGLWDHPIPGRPAVTTQTPVEKALLRVILGTVIEEHILPDDGVLAQRVNQTLSEDRVPEAGRVTASMVETIRLRWDIQRPXVNQQLRVAQRSQVPQPDMARLGQTCVGGAFILAVLLVETGWLKLAHLLPMAAKYAVTSTQWLLTAIFAVIYGVRRAFHLDDVRDIGFALLTGRPRPLTHGTFQHLLRAIPAKDAEKFYQASAESEVQAAGEGTRRISLDGHNLPRWTRIVELVKGKIGNTGRILKAEEMVLAYDLDAHLWLGLRTYHGTKKLSKGLVEIARELLKHRGSLKGILRLFFDKGGYSGSIFLALSKESRVRFYVPAVRYANNVAQWEQLXEDDFDXTPFTFDKHADWPVDQRPAYRLADTEMTLNVREGSKIVDTVTLRAVVLHDPQGEKPAERWPVVILTDDREIDARALLNEYGDHWGQETAHRIGKHDLYLDILPPGYVLKTQRDDQGELQREVTFDQTAFFLSGWLRCLVFNLMTRFAEEMGGGYTKMWAGTLLRKFIRRPATLYLVGKDLHVVFDPFPGQDELQPLLDKLNAKRTALPWLNNLVVQFSIAQDEPVHPLTEPEKRNRLLGDG*
Ga0115359_10002380	Ga0115359_100023801	F071990	TLLWDVTADGGNTLAETFKLWLSSNGFDQAGSVLKVQPLCGDDGTDILTEKYIMNAVVASYTWATMVESEPGAINLWPSDEGTSIVLDAAPPCGDDVIMWAMYCAIAAGETTGTYKGTDSGYELQFSFKYSYS*
Ga0115359_10002405	Ga0115359_100024054	F038478	VHKEIMIDKTLNETLQKKHPDFTGELIDFDFGPNKIQIQATIVKELLEIDEEKXTQAFEGLCQSFSEVCSRYHIKFDPIDLFILVDDELKRGTSTKFRDVNNGNLFAEISIPTKDFQMHEYWKYSFXHELGHSWFSIEFSPEDMEYGHEDLFIDLVVICTFRKILPSYKRVYQEVRKHRTYFLTQQSKRFIGKELYRQILQDPEAYLRDLQQKIDSAYT*
Ga0115359_10003316	Ga0115359_100033163	F034978	MXVGINATRDQIEEFKSSILWSDIVRELKNWSIGFNSEMMSIVDNSADDNSSTASVLLHMGDLNGRQKAVDYLLSIPDVFLSILETKEIKEGEIDEE*
Ga0115359_10003580	Ga0115359_100035802	F036294	MDRGSTDEAIVGVKLVADEDAVTYLRVKLPESDREVGAEGWNM*
Ga0115359_10003802	Ga0115359_100038023	F044014	MSSTEYKPRFSFEISWKQKERADRLLVTYGLRRAMFGNILDDVLDMIEEFGGVAIGVIMSGKVKPRDIIPSMKQADEVGKK*
Ga0115359_10007132	Ga0115359_100071322	F034978	MDVGINATRDQIEDFKKSVLWSDIVKELYNWKEGFSSEMMSIVDNSADENPSTASVLLHMGDLNGRQKAVDYXLSIPDVFLSILETKETKEGETNNGE*
Ga0115359_10007251	Ga0115359_100072514	F039402	MSLVDYSDLEQKIKDAPEPKILPRGSEVRARIIAVRSGISDKNSCQWYQPVFDVPDDPMVIEFNAFFWDLIDAEGKVDGKQVERNMSSFNCFAAAFGIDLSRPFNWDDDLLGLEGWMILGVKKDDEYGDSNTVKKYIVGK*
Ga0115359_10012579	Ga0115359_100125793	F071990	MAEPTTRFRLIPQSTAVADINTPAKRLAAIAGESVVSTGIGNEADFGTIDISGGAENSSVLTILWDVTADGGNTLAETFKLWLSSNGFDQAASVIKVQPLSGADXGGAALTENYKANAGTGDYTFASMVXAEPGAINIWPTDEGXSIVLDAVAPCGDDVIFWAMYAAIAAGETTGTYKGTDAGMELQFSFKYSYS*
Ga0115359_10017406	Ga0115359_100174062	F026445	MISVNETKQKRQNRTVTLHLGNTLAEYQEMISTEEGMQTLIQQVEIADSLNWGHLADGHHEGCPRCLRFTHHDGYARWTKHFDGTQELVTIIRVRCLDCEAVFTIQPSFIVRYKRYDTDAMEKFMVLLFITEDSYRMAGVSQALGMDTHQEGTWVALEKANQDAISPTSLWGLVQWXGQLSPAQLNLALGVEPPTHIIEDEKHMKECGEKVYVPIVYAPREALIWWTDYIDSVSEDALLSSLERFKAISERLAHIVGANVDGWDPAQKALREAFPGITLAECHLHAMIKLGQHLATFKRQRKAMGQPVSEQEEAQIRAAFVRVLQAPTPTAYQKALDDLPNVFDNEPLASRKDSLVTKQALFQAWTTDANLAVVSTPLDQCMKFLNRKQDNMQTLHGPKSGLATVNAWAITRNCWRFLKGALRAGLSPLELAGANFLGIPWMQLVNLVLCAWSTLALAAGALTIST*
Ga0115359_10018327	Ga0115359_100183271	F101182	MNSYEEGLQYERKMDRISEQIEELMLDAMITALTKIKDRNLFYSDVESRPQN
Ga0115359_10025669	Ga0115359_100256691	F086602	VEIVRELLHHRGQLKGLLRLFFDKGGYCGQIFRTLADCPNVHFYTPAVRYSTNVKQWEQLKDADFDLEPFVYDKHXDLPAKERPMYRLADTETTINVREGHKVVGTVTLRSVVLHDPQGEKPAERWPIVILTDDRKIDARVLLNEYGDHWGQEFAHRIGRHDLCLDILPPGYVLKTWRDDQGELHREVEYDQTAFFLSAWLRCLVFNLMTRFAQAMGGEYIKMWAGTLLRKFIRRPATLYLIGKELHVVFDPFPGQEELQPLLDKLNAKRTALPWLNNLVVQFSIAQDEPLHPLTEPEKRNRLFGDX*
Ga0115359_10027371	Ga0115359_100273711	F083361	NKSIPLSVVHSLHIYLRRGDVNAQIDLSDCTLSTEQQAVVDALNEFLASLPDDDDPDVALRLAMEILEAADVAPQAILAEAAGFMQSRSVRVYKQRLREEGLAGLFDRPIPGRPAITTQTPVEKAVYQAILSAVIEEHALPDDATLAERVNQVLRETGVPEAGXVTASMVETIRLRWEIRRPATTQQLRTTQSSETCETDKVRLGQTRVGGAFILAILLLETGWLKLAHLLPMAPKYAVTATQWLLTAIFSVIYGIRRAFHLDDVRDIGFALVTGRPRPLSHGTFQHLRRAIPAEAAERFCKAT
Ga0115359_10034867	Ga0115359_100348672	F071990	LAAVAGESVISTGAGNEADFGTVDISGGAANSGVLTMLWDVTADGGNTLAETFKLWLSTNGFDVAGTVIKVQPLSSGGAPANTEEYIVNAVVGSYTWATMVEAEPGAINVWPTDEGTSIVLDAAPPCGDDAIMWAMYAAIAAGETTGTYSGVTANYEIQFSFKYTYS*
Ga0115359_10040353	Ga0115359_100403533	F039402	MSLVDYTDLEKDISDAPEPKILPRGSEVRARIIAVRGGISDKNNCQWYQPVFDVPDDPMVIEFNAFFWDLAEARDKIDDKQFQRALNQFKNFAAAFGIDYSRPFNWDDDLLGLEGWMILGVKKDDEYGDSNTVKKYVVGK*
Ga0115359_10043452	Ga0115359_100434521	F075043	FEKQFDFSHEAMVNDDIGYFEDVATKMGEAARRTLEKYVSRFYTNAVSIARIIAGGALYTQNGRLTSARVSEARMGFGQRTDACGEPINADLKFIVYHRGLADTVLTIQNSTLVPENATNAANVVRTAFAGVKDPYITGAAPNLPWYAFADPNSPQNIAPFVLARRSGMPGPVIVRKHSDMEAVTSMLGAGAPMAPIFGDFESGNIVLKVMDAWGTYVDDINGNVFDRH
Ga0115359_10050108	Ga0115359_100501082	F061521	MKPALIRIEIERIVNLVAGFGWTKVEEKVAPGEVSITLKKVIPVTVEE*
Ga0115359_10063705	Ga0115359_100637051	F091298	PLVVSRWLCGEDLRGIYQPIILHDCVLDGLDLERRTFYEMVELVGCRVAAAHFAQAYFYSILIIEDCVFEGEFHGRGIQSDGRMVVHNTVFAGWAEFGDISLRGRVDLVDVSFSGGTNLLHVLADGSQERLGREIRLGGCGFRASDVPEGLDMARLGIVPLVEGNPRGAEG*
Ga0115359_10162999	Ga0115359_101629992	F061521	MKPALIRIEIERIVNLVAGFGWTKVEEKLAPGEVSITLKKVIPVTVEE*
Ga0115359_10165988	Ga0115359_101659881	F044014	MNSALKEERHKVNTEYKPRFSFEISWEQKERADRLLTTYGLRRAMFGHILDDVLDMIEEFGGVAIGVIMSGKVKPRDIIPSMKQAEEIGKK*
Ga0115359_10430631	Ga0115359_104306311	F061521	MNEALIRIEIERIVNLVAGFGWVKTEEKVLEGKVQITLTKSTP
Ga0115359_10432769	Ga0115359_104327691	F088916	MPSTILDNVKGSDFPKIWADKINIISNKTYTVIVQPQEERQSLQKIMSEISGNAKTRGMTPDVLENILGEKIKHIL*
Ga0115359_10460926	Ga0115359_104609261	F044014	ESMNSALKEERHKVNTEYKPRFSFEISWEQKERADRLLTTYGLRRAMFGHILDDVLDMIEEFGGVAIGVIMSGKVKPRDIIPSMKQAEEIGKK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300008340: Sea floor sediment microbial communities from Gulf of Mexico Methane Seep - MPC10B

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences