3300008334: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 765560005 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008334
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053263 | Ga0115372
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 765560005 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 107676363
• Sequencing Scaffolds: 18
• Novel Protein Genes: 20
• Associated Families: 19

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	3
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp.	2
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	1
Not Available	1
All Organisms → Viruses	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: National Institutes of Health, USA
• Coordinates
  • Lat. (^o): N/A
  • Long. (^o): N/A
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040149	Metagenome	162	N
F040685	Metagenome	161	N
F043235	Metagenome	156	N
F045567	Metagenome	152	N
F047508	Metagenome	149	N
F049707	Metagenome	146	N
F051214	Metagenome	144	N
F054109	Metagenome	140	N
F061926	Metagenome	131	N
F063778	Metagenome	129	Y
F067846	Metagenome	125	Y
F081454	Metagenome	114	N
F095631	Metagenome	105	N
F097525	Metagenome	104	N
F097527	Metagenome	104	N
F098763	Metagenome	103	N
F101358	Metagenome	102	Y
F101359	Metagenome	102	N
F105377	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0115372_1000027	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	44477
Ga0115372_1000226	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	19401
Ga0115372_1000612	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	11865
Ga0115372_1001102	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	8894
Ga0115372_1001225	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae → Chryseobacterium group → Chryseobacterium	8326
Ga0115372_1001470	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	7570
Ga0115372_1001763	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	6866
Ga0115372_1004895	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	3653
Ga0115372_1005302	All Organisms → Viruses → Predicted Viral	3457
Ga0115372_1007120	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp.	2778
Ga0115372_1007388	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2700
Ga0115372_1009491	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	2219
Ga0115372_1015243	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp.	1462
Ga0115372_1016615	All Organisms → Viruses → Predicted Viral	1350
Ga0115372_1016658	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Lactobacillales → Streptococcaceae → Streptococcus	1347
Ga0115372_1021534	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Actinomyces	1057
Ga0115372_1028586	Not Available	810
Ga0115372_1028797	All Organisms → Viruses	805

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0115372_1000027	Ga0115372_100002730	F051214	MGYRLLKGTHMPGKIIAHHTHLRIDTEFIELRDCFEAFRRGVEYKEKNDVDDILVICNTTDLIEYQLKNGDSVIVTHDPIHRIMVMRLFLHDENIALKPVYIYNNREYQIACEFLRQILHDKIDLKKEWLV*
Ga0115372_1000226	Ga0115372_10002265	F061926	MMIKTAKHIKTFLASMLLLIFVMNVSGLFVQLHHQETHQKTEKIAECSDKVCYHKAHLQTKSDCDCGFLCTLNYFYILPEKPQTEFHVNEYFSYFSSYKIFVSERITLLWQSRAPPVFS*
Ga0115372_1000612	Ga0115372_10006127	F040685	MKKLLFKLFFALAFASISLHGQEKIQQVEFSSFGGRAVYSERYTLNSLKKEFSAKPLMGQNEDLPKEISLPNTPKNWEAFTKKINLNKFKKLREGPSQQAFDGQDEVIIIKTNKKTYRKMNASGNDHDREVWYDLLQIIAKEFGKKSIYE*
Ga0115372_1000612	Ga0115372_10006128	F040685	MKKLLFKLFFALAFTSISLHGQEKIQQVEVHIFGGMALYSSHYTINFLYKEFEAKQVMGEPAELPKKILLLNPPDKWRFFIKKINLDKFKKLRDGPSEQAVDGQDEVIIIKTDKKTYRKMNASGNDHDRETWYGLLQIIAKEFGKKGIYE*
Ga0115372_1001102	Ga0115372_10011029	F097525	MQQKKIMFKIQNAYQKIIFSIHGHRERKDNFEDWLKVEVKVKDDLEGKYYTRVSECMLFSEVLGLLEWFEQILANQEKPAEIGFIEPELAFEYQNKKLIVLLCYDIAPVSYGEEPYELTFPLDDKTLAMIIKELGEAVASFKRE*
Ga0115372_1001225	Ga0115372_10012252	F101359	MKKFLSKRSILVGALALALGFIVSSCSRDKDDDAIYTAKLQVQYQGNNSINGSVTYRDANGNKRKIYLRSGMSENISFEVNKGFKSFVEVKATDIYGNLFVKWTVTKTYTGARVQNWSTSFTSYTGQDFTDSYKETVK*
Ga0115372_1001225	Ga0115372_10012256	F081454	MKTFKFVLLLFITSASLVFGQEKRYFFKYEYHPNSKYLIKLKTDMDGGYKFVGSKEVIDKIGMNEVKMKMNMNMGSTISTQKKQNNNIPFVLEYTDYISEAEINGEKVNRKIPIQGVKLSGDIINGKKMEVKNVEGNIDEDTKKILTESIKQFSAIDTDFPKEGLKIGDSFDMVIPYKQSIPNAGDIEMKMNVKYKLLKVEKEEAYFDMLIDFVMGDKNVKNMDLSASGDGKGFLLFDMKNNYFTSQNIDMTINLKLKTELLTLENTSKAKSVVTQQKIK*
Ga0115372_1001470	Ga0115372_10014704	F047508	MLGHRLVEGRVKYPYLRDIGEYLRHSFDTEDVGWVVKWSKLCALMEHIYHLWGDTYALSKALCTVYEAVTDGVNLIEGLYEVLFFENVEDNFYAACVVRNVKVALDLLSFGVTEGDEGVVDPYALFVPRGQDLVVGELDEGELQGGAATVEDQDFHKVLYYMVRCELILSSP*
Ga0115372_1001763	Ga0115372_10017633	F040149	VADEGAKELRWKVLIEEQGIPVLFVEVVAWYDGRVSSSEILRSVGIALEREPRLAPVWHYDSEDAIHDFIYDISVPKGHTLTAVRERETVVMQLFNIHRMF*
Ga0115372_1004895	Ga0115372_10048953	F045567	VHTGTHRVEDALLPIDGDILTPRDGTYIVQTERVVVVLVSQEDSIDTIDTETCGLVVEVRATVDEDTLPTLGDDEGRGAQTTVTSIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHG*
Ga0115372_1005302	Ga0115372_10053022	F095631	FGYLGDVNSNPLQNAVSMAAEYSNEAIPIKAKFEKNVISHALSLGINKIYAEPSTMNAMLIFYENELILNTVNDTFRLDREVKIMVGDYEFHIPYDLIIKRILLPTGDYVYTGMYDTTQVNPIITRNSKDVDPYLKPTIKSEIDGQPVIMCLVELRQYEFSTIHKTIVTSNPLESKMMQFEFDNQLAGFDVDVKEYGNPVRKLKPVYNGLNTDGVNDFCNYTFIDSSTIRIMFDNASYLPTANTEVTVNLYTSQGSKGNIKYKDTIYFRVNSSNINYDRLNLLVVPTGEAQYGLDKKSISDLKKLIPKEALARGSVTNSTDINNYFNTIADEDNKIFFFKKMDNPLSRLYYAFLLMDTTTNIIPTNTIPVECIRRDFDNISDSNYILTAGNSIKYDGKTNASVVYNASKDELKKISNESFLYMNPFMCIINKKPLYVSYYLNIMDVSKILEFTYVNQDSKVQFITNNMNWKRSYLTKRDTYVCDISILQNIQSNIGIIHRDDPYDPNKITGADLKVIAVFYSDDKYQVPYRWAEAKFVNYDESSYSFDYRFELNTDNKIDKNVRLKVNDVHEMKAAADKFEPGYMLNNMPMKIFVYCKNVFEYDAGRNKTEQYFADGFLNGYSLTNEYTVKYGIDFLYNYSDLIESVIKIKKQDNGQISYYIDRVPVIGYDYVNTEDKIQSFINELEKKRIHILDCLEVLEDSFGIDIKFFNTYGPSKIFYIENSVPINRVNLSLKFKIKLLTASDKYIIDYIKNDIRKYIEDKSKITDVHIPNIITYITQKYADSITYFEFLDFNGYGPGYQHIYRNRNLTYLIAATI*
Ga0115372_1007120	Ga0115372_10071202	F043235	VDEFGTQLTDTLLDRPDRSKRELHHWAVNGDDIVQLRHMDEVVPSDEGHLLIDLCDDDSRSLCSGLGIVTRYPEGAIALFIGLAHRDQCDIDRIDTIPKEVWEFMEVTREIVDTLIQVSGAAILVKEVKDGMYMPHHLWAEVPRLGKVQHVEGFHVREALAIIVEGFGEAAGGCHSMAKDQEVPALYCRSHGFEGGRCMASNVLLPGSAH*
Ga0115372_1007388	Ga0115372_10073886	F049707	VVSEYKSPHNDGHDPYILIWEYGNDIRRAEFTERWAEYDETGWTVWYFRLVDGGVMTFSSREWEQKDDVNHLTTIWMKPSLYDIERKEN*
Ga0115372_1009491	Ga0115372_10094911	F101358	MTEKHSASLPPRQPEHLLTQPITTDGTPKERATHLDTHSIPKRQDVPRHQWNVLRSSGQLDEGWIDAEIIDKDGTVLVRMTKPVHRSNIHQLGKCVPLAVLQEQNIDFTNAYLQKAYGVMVKDGRLQPVADTTHTTHQNDSTDEQETEVLPAQGGDTHEHLDGDSARQLVGSVAAKASGEVDNSPLVQRALERIR*
Ga0115372_1015243	Ga0115372_10152431	F098763	MDRRASLRILSPALHLAMKLFEAVVRTTISYDPSDEVEGKRGMNAIPTAADE*
Ga0115372_1016615	Ga0115372_10166152	F054109	MAGRPKSKKGVKAHTAFKIYPDDKARVQAMADKLDISLSSYINKAVLEKVERDEKSEN*
Ga0115372_1016658	Ga0115372_10166583	F097527	MIYFKMEKIGNSTKTEKKKTRSENLVIITIPAAGGEQARPRGPRVFVA
Ga0115372_1021534	Ga0115372_10215341	F063778	EGAKQKLFQELQDALGLVADADTSAHDVAAITHSAADGHQLTEVMLQQMTAVDAYLDNCQTSINDAISNIEAIPLDPPPED*
Ga0115372_1028586	Ga0115372_10285862	F067846	QWERKTFNDWDKQRSKEDDYNRAVEMEIESIKEDIANGYDDVICAFSEKMFDDDEFLKAVALGTDYEEMRIKILTAMAEDKLEQLEEDYRKGYILND*
Ga0115372_1028797	Ga0115372_10287971	F105377	VTRTEERSEVRDFDKLPLLTPEEAFERAREMGWNRPLFDHGYRVRGLNDWRAIETLLRQYDVEDAVIASFGLKRFEEIFDAFAMMSERGWRLWQTSANVYVAGELRTVPAIRAHYRGD*