3300008272: Human stool microbial communities from NIH, USA - visit 1, subject 158337416 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008272
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052967 | Ga0111092
• Sample Name: Human stool microbial communities from NIH, USA - visit 1, subject 158337416 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 215647339
• Sequencing Scaffolds: 10
• Novel Protein Genes: 10
• Associated Families: 9

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella → unclassified Collinsella → Collinsella sp. 4_8_47FAA	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	4

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026592	Metagenome / Metatranscriptome	197	Y
F042910	Metagenome	157	N
F044554	Metagenome	154	N
F050794	Metagenome	145	N
F073574	Metagenome	120	N
F076190	Metagenome	118	Y
F077320	Metagenome	117	N
F081354	Metagenome	114	Y
F099269	Metagenome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0111092_1000059	All Organisms → Viruses → Duplodnaviria → Heunggongvirae	148922
Ga0111092_1002647	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	11886
Ga0111092_1007694	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Eubacteriales incertae sedis → Gemmiger → Gemmiger formicilis	4105
Ga0111092_1008516	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella → unclassified Collinsella → Collinsella sp. 4_8_47FAA	3695
Ga0111092_1014862	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae	2069
Ga0111092_1017750	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1723
Ga0111092_1025714	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1179
Ga0111092_1034823	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	868
Ga0111092_1048654	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	624
Ga0111092_1050719	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	601

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0111092_1000059	Ga0111092_100005914	F050794	MLYTSNYFVKVRQKQLLDHTYSLSRDQAFDYMTEFNKRLSDKVGIKCTMDILLPTDDDNANIIIEHNGIIKKLMKEAEKLELDTDAIEAMMRDLLDELKDDIDLNILIFDVSQLLIKYNLFRLDAITEQEFKNSFVRMDSRNMEIKKLTLSDIKKVVEMIEDRYSYALYMTEEYG*
Ga0111092_1002647	Ga0111092_10026472	F081354	LVRENQQSSAHNFVKDFSSIYPESRRRSPLKKGAVTEIPLEYGKTEVQIPFEPLQAAISSMELPKNFENKKLPNPLR*
Ga0111092_1007694	Ga0111092_10076941	F044554	FHGGLPPPCIFFHTQAYVLAGRFIPVLCASIARLFPCRTEIARCLTLDFAISRYLLLSFPFSFRTNFAQALFSSLLFVSDTCAKSILFLLFENEIAHLQGQYRFNSHRYCFSAFLVL*
Ga0111092_1008516	Ga0111092_10085162	F099269	VGELLLLDDLGDRASGASVLASATGDAGVLVSDGGDVLELQNASGAGVDANATSDALVGINYGMSHGSFLSVDRRYRRCASV*
Ga0111092_1014862	Ga0111092_10148621	F073574	MLLPAAVRPYAADVDGTASRVRCAIALNGSKELHIQLCGRLKRGLFGRNQLLADGDVLCVALHQPDGDVPLFDSRCDGYANVLDGKQPPAPIPLHPAICPKCRNAAFQVRLTFEYPEAEELAADMLGA*
Ga0111092_1017750	Ga0111092_10177501	F026592	RLQTASPQGIDAQASQGSVAPLTERSVETFSVGQFSSADRE*
Ga0111092_1025714	Ga0111092_10257143	F026592	TVCQTRLRTASLQGIAALAAQGGVATLTERSNATFSVKQFLSADRE*
Ga0111092_1034823	Ga0111092_10348231	F076190	KNVFTAASRVSGRVWSLVRITVPNDLKFVRIRVEKPQNNSLYPYFQREPL*
Ga0111092_1048654	Ga0111092_10486542	F042910	LHEDGKRVLRVVCTQYPTMSTLNWLETLSLVFTAFSCPYWEDAAETSFLMPNTSDAPSKLLAVPGDAPETPLNLLIRNIGDAAITTLTVSAAGKISFQGLTLAPGAAIRIHHDAGVFAAEMVSDESAVSILPYRTPDSADDLLLRPGVMNEIRVEAGSAAFVSGRCKGRYC*
Ga0111092_1050719	Ga0111092_10507191	F077320	MKRKGMHRRRKWVLLAVLLIMVGIAAVWRIWQTPRPTVLHRQDAWLSSAEPEMVGTLPDNAFTAELPEEIDGRLLYIRDYSASGHYQIVWENVSAEAAEVYLTALLDKGFTRLMGTAEDIASGVLLA