3300008268: Human stool microbial communities from NIH, USA - visit 1, subject 158499257 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008268
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053005 | Ga0111491
• Sample Name: Human stool microbial communities from NIH, USA - visit 1, subject 158499257 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 226755297
• Sequencing Scaffolds: 16
• Novel Protein Genes: 16
• Associated Families: 12

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	3
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	1
All Organisms → cellular organisms → Bacteria	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	5
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Oscillospiraceae incertae sedis → [Eubacterium] siraeum	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Oscillibacter	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013656	Metagenome	269	Y
F029444	Metagenome	188	Y
F032286	Metagenome / Metatranscriptome	180	Y
F039198	Metagenome	164	Y
F047125	Metagenome / Metatranscriptome	150	N
F067720	Metagenome	125	Y
F067844	Metagenome	125	N
F068941	Metagenome	124	N
F074899	Metagenome / Metatranscriptome	119	N
F076064	Metagenome	118	N
F076189	Metagenome	118	N
F076190	Metagenome	118	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0111491_1001669	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	19005
Ga0111491_1002373	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	14111
Ga0111491_1002824	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	11902
Ga0111491_1005968	All Organisms → cellular organisms → Bacteria	5714
Ga0111491_1006031	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	5661
Ga0111491_1006896	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	4940
Ga0111491_1007377	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Oscillospiraceae incertae sedis → [Eubacterium] siraeum	4619
Ga0111491_1018538	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1823
Ga0111491_1020331	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae	1668
Ga0111491_1028699	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Rikenellaceae → Alistipes	1183
Ga0111491_1033863	All Organisms → cellular organisms → Bacteria	998
Ga0111491_1034584	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Oscillospiraceae → Oscillibacter	976
Ga0111491_1042225	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	800
Ga0111491_1047526	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	708
Ga0111491_1054310	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	619
Ga0111491_1061288	Not Available	547

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0111491_1001669	Ga0111491_10016698	F013656	MSEIMEKKIYKEVNKNETETTINVLYKEEKICIYTNKVDLQKQLNKLLGEPTKEYKIKRSIVGSSWEIDFKEKSKISQMILKANIYEL*
Ga0111491_1002373	Ga0111491_100237328	F067720	MASATYEHFVDVNKMLAIHERFLDLTKTSHLGSVTVMVRNAGELPQPFWLGAACGGGSRSLSASVARA*
Ga0111491_1002824	Ga0111491_10028246	F013656	MNDIKKIYKEPIKEEMETTINVLYKEKKLAIYTNKVDLQKQLNKLIGKPIKEYKIKRSIGGSLWEIALDDKIKIQKVIVKANIYEL*
Ga0111491_1005968	Ga0111491_10059688	F068941	MKNNKGLIIGIIGLIIVMIGGTYAYYRWNSTSNINVSVKISGNTVTFVGGSNVTGTLTPVDSKEKGIKKDITVKANEAGSTMSLYMDLTTMPNELKEESFVYELYYNDSTLVKKGNFKAYNASSNASGITYASSGVTTLTLFTDRNVNTTTDKYTLYLWFNGKDFTNPDTMQNKTLSFDLYATGKNATLNG*
Ga0111491_1006031	Ga0111491_10060311	F076190	SGGWNGRSSWARTAGGSITISVKNVFTAASRVSGYVWSLVRITVPNGLKSVRIRGRKTQNNSLYSYFQREPI*
Ga0111491_1006896	Ga0111491_10068964	F013656	MNKKIYKEPLKSETETTINVLYGENILSIYTNQVKLQKQLNKILGEPTKEYKIKRSISGSLWDIPLNDKVKIQKVIIKANIYEL*
Ga0111491_1007377	Ga0111491_10073773	F067844	MNTLAAETASAWYLILNRKLQTLPIYKTQLSSHLPRPLTMGTQQVSAGAAVITPQHRSYRVPQGSPQVFGGP*
Ga0111491_1018538	Ga0111491_10185382	F076189	VLSAGHCFFLSPFIKPLLYVEKLQIGTVLPVVSDLYREFAELSAHFDLHAIQSAQKQLRMLCNFHENTFGLLIFYTNYAIL*
Ga0111491_1020331	Ga0111491_10203312	F074899	PRDPHGEMSGRKQWNKQAATSSFLDKKTPQSLIQQGLEGSTVVGKDEVGSSNLPSSSK*
Ga0111491_1028699	Ga0111491_10286991	F076064	LKKTTPGRALENLFYLQYDLPPEASFHATTEEAKRPDELYMRKLLPELTRLKLQPRHVVANDEAYYAAMKGVTLFTPEAEKLMLTEDYFSARRQIRLCA
Ga0111491_1033863	Ga0111491_10338633	F074899	HRDPHGKMSGRKQWNKQAATSSFLDKKPPQSLVQQGLEGSTAVGKDEVGSSNLPSSSNINRLNRLI*
Ga0111491_1034584	Ga0111491_10345841	F029444	PESFMGVAEQLTGFELEDLMSWTVSNLQRPFREDFSLEKSGIIAEKESQIFGRRFVGFDS
Ga0111491_1042225	Ga0111491_10422252	F039198	MKLTIAEIQGTKYVQIYLTEEELQKKETKDLIKKYKQEKYSVAIFVSGKENYPEILERIITKQVGLNKNVC*
Ga0111491_1047526	Ga0111491_10475261	F076189	FYFLSPFIKPLLYVEKLQIGTVLPVVPDLYREFSEISTCFDLRAIQSAQKLLHMLCNFHENTLGLLIFYTNYAII*
Ga0111491_1054310	Ga0111491_10543102	F032286	VTPVRHRALVFDARLSAGNTANDTLVTGGTFRFCRLMCLCVKRRNIMLNDKRRSLLNSALFRADNRTEQKTISPFSLALIFTFDFAALSECRSCPEDRSRRFVLLGALDAALRQRTYPVRTVMQFSRFRCDCKTILAKNIAL
Ga0111491_1061288	Ga0111491_10612881	F047125	MDVVLLLMVLGVMLSGFRAADALDHMRREILQQEGKRRGWWS*