3300008161: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 706846339 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008161
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0052908 | Ga0110913
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 706846339 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 147282852
• Sequencing Scaffolds: 17
• Novel Protein Genes: 21
• Associated Families: 19

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	1
All Organisms → cellular organisms → Bacteria	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	3
All Organisms → Viruses	1
Not Available	4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga	1
All Organisms → Viruses → Predicted Viral	1
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022002	Metagenome	216	Y
F040149	Metagenome	162	N
F043991	Metagenome	155	N
F045567	Metagenome	152	N
F047127	Metagenome	150	N
F049707	Metagenome	146	N
F051211	Metagenome	144	N
F055792	Metagenome	138	N
F070224	Metagenome	123	N
F077403	Metagenome	117	N
F080165	Metagenome	115	N
F081454	Metagenome	114	N
F085821	Metagenome	111	N
F095631	Metagenome	105	N
F095632	Metagenome	105	N
F097490	Metagenome	104	N
F098763	Metagenome	103	N
F101358	Metagenome	102	Y
F105377	Metagenome	100	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0110913_1000009	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales	139008
Ga0110913_1000128	All Organisms → cellular organisms → Bacteria	42483
Ga0110913_1000341	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	27504
Ga0110913_1000392	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	25767
Ga0110913_1000443	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	24145
Ga0110913_1000512	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	22484
Ga0110913_1000581	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	21302
Ga0110913_1000763	All Organisms → Viruses	18516
Ga0110913_1001697	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	11000
Ga0110913_1004751	Not Available	4961
Ga0110913_1006224	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	3902
Ga0110913_1007707	Not Available	3193
Ga0110913_1007767	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga	3166
Ga0110913_1012213	Not Available	2108
Ga0110913_1015046	All Organisms → Viruses → Predicted Viral	1753
Ga0110913_1020210	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Saccharibacteria	1336
Ga0110913_1049232	Not Available	597

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0110913_1000009	Ga0110913_100000994	F095631	MASDAVSANTVARSYSDTVINTVKNDTMLNANIYDINQYIENIKKKYISEDDLTLSMGIFGYLGDVNSNALQNAVSMAAEYSNEAIPIKAKFEKNVISHALSLGINKIYAEPSTMSAMLIFYENELILNTVNDTFRLDREVKIMVGDYEFHIPYDLIIKRILLPTGDYVYTGMYDTTQVNPIITRNSKDVDPYLKPTIKSEIDGQPVIMCLVELRQYEFSTIHKTIVTSNPLESKMMQFEFDNQLAGFDVDVKEYGNPVRKLKPIYNGLNTDGVNDFCNYTFIDSSTIRIMFDNASYLPTANTEVTVNLYTSQGSKGNIKYKDTIYFRVNSSNINYDRLNLLVVPTGEAQYGLDKKSISDLKKLIPKEALARGSVTNSTDINNYFNTIADEDNKIFFFKKMDNPLSRLYYAFLLMDTTTNIIPTNTIPVECIRRDFDNISDSNYILTAGNSIKYDGKTNASVVYNASKDELKKISNESFLYMNPFMCIINKKPLYVSYYLNIMDVSKILEFTYVNQDSKVQFITNNMNWKRSYLTKRDTYVCDISILQNIQSNIGIIHRDDPYDPNKITGADLKVIAVFYSDDKYQVPYRWAEAKFVNYDESSYSFDYRFELNTDNKIDKNVRLKVNDVHEMKAAADKFEPGYMLNNMPMKIFVYCKNVFEYDAGRNKTEQYFADGFLNGYSLTNEYTVKYGIDFLYNYSDLIESVIKIKKQDNGQISYYIDRVPVIGYDYVNTEDKIQSFINELEKKRIHILDCLEVLEDSFGIDIKFFNTYGPSKIFYIENSVPINRVNLSLKFKIKLLTASDKYIIDYIKNDIRKYIEDKSKITDVHIPNIITYITQKYADSITYFEFLDFNGYGPGYQHIYRKDESIVGKIPEFLNINSTNTEDNKLDISIIIA*
Ga0110913_1000128	Ga0110913_10001284	F051211	MRVKKAIRIFEKIRDLPYGTSGSDEVWSCYRKCVLLKQELQHIGITSQLLIGVFDWQDLPIPEHILNLRRQRHERHMILRVFINGSTYNIDPSIDIGLASTLPIAHWDGTSSTATMASLKHLRVYRPHSLHERILSRLRRKLFRGNPKEFYTAIDKWLADTRAHQLS*
Ga0110913_1000341	Ga0110913_10003413	F097490	VFLKTQKMNKKMNVFCKIILPLLCIISCSERKEIEVYNMKIDENKKEVLVEIRNNTEKNYYLLSPVVSAMADHGLNHVTSEMIEGQMYYKKLDSIVCSVCIWDDICKEEYYAMRDIVLLPKKSVKTIKYKYNNEKEYKIDEFYTVFPYNGYSNEIGKKMHFMLKKKLDSSNIIKGYEFYNKDIETMTIKM*
Ga0110913_1000392	Ga0110913_100039229	F095632	MTMSFKETTGYKVVSLVASTSASITAGAVVGALCPPAGVVLTAIYGVGSSVLGTYVGDKAGRQYAETLAETIDSMKTPQNN*
Ga0110913_1000443	Ga0110913_100044325	F049707	VVSEYRSPHNDGHDPYILIWEYGTDIQKAEFTERWVEVDENGRVIWYFRLDDGRVMTFPSRDWDQKDDVNHLTTIWMQPKMNGERN*
Ga0110913_1000512	Ga0110913_100051217	F047127	MKKTFAFILLSIISLAKAQLTDIRYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGERREAVRLWDKDIFYLEFTDRKMNKRVFRQIPELKKNGKLFEVMLQGDVSWYRRYFSYRADTWDANYEHEDYFVKGDEIVNIPVKGRYKKKLKALLSDKPEIAKGVDQMVGDRDIREILEKYNSK*
Ga0110913_1000512	Ga0110913_10005123	F081454	MKAFKLVLLLFITSASLVFGQEKRYFFKYEYHPNSKYLIKLKTDMDGGYKFVGSKEVIDKIGMNEVEMKMNMNIGSTISTQKKQDNNIPFVLEYTDYISEAEINGEKVNRKIPIQGVKLRGDIINGKKMEVKNVEGNIDEDTKKILTESIKQFSAIDTDFPKEGLKIGDSFDMVIPYKQSIPNAGDIEMKMNVKYKLLKVEKEEAYFDMLIDFVMGDKNVKNIDLSASGDGKGFLLFDMKNNYFTSQNIDMTINLKLKTELLTLENTSKAKSVITQQKIK*
Ga0110913_1000581	Ga0110913_100058112	F040149	VADEGAKEFRWKVLIKEQGIPVLFVEVVAWYDGRVSSSEILSSFGIALEREPRLSPVWSHDSEDAIDYFIYDASVPKGHALTVVRERETVVVQLLNIHRMF*
Ga0110913_1000581	Ga0110913_100058113	F055792	MEIASQALDSTSAVTHRILLLTTQLGESLLASFGAEDGVIAEAMVTRALKRDLAIDSTLEEVGPVLIDKGDDGTEAGTTWGRYTLKTLQKEGYILFEGSMLPCEARRVDSRSSVKSLDLEPRIIGKTMKPIALPHVARLDEGIPLQRIGGLRDLLVTPDVSQANDLQTSREEGTDLLQLMGIIARKYQLFHTFVIISSASLRA*
Ga0110913_1000763	Ga0110913_10007637	F105377	MEARTAVRDFDKLPLLTPEEAFERAREMGWNRPLFDLDYRVRGLGDWKALETLFRQYDVEDAVIASFGLKSFEEILGVIAMLHERGWHIWQTSAKVYVGGELRTVRAIRAHYPGD*
Ga0110913_1001697	Ga0110913_10016972	F098763	MDRRASLRILSPALYLATKLFKAVVRTMISYDPSDEVEGKGGMNAIPTAVDE*
Ga0110913_1004751	Ga0110913_10047514	F077403	MNTIMLLLRRLVLIILLLPSMCTVYAEDRISVHFEVRWHREHNPMDTLRRELDVPYLHIVYQNHTDTAYYLVRQDQSNWIFPRLRYYTVIEDGSRPEKYNLTYYVPRWATYPLKGAGRSVRERRHYTHHVLLRDQAWEVELEPSIVDGQPKPRIAYGEGMDNWSECAYYLQGYLYYLMTPQLDHDWYQVTYLSEHMEYSVGMEMVGTEGTLKPFVHRLAFVPAHSRREYVYSLLAFAVIHGRWQFLLPDWEASGRLRDECIPLNVYQLRGKGSTASTPSGYPLPEHYEGYQLYRGWVRGDSISIKM*
Ga0110913_1006224	Ga0110913_10062244	F045567	VRQRDGRDTLTEELEGGITPLLYRTEGEARRPWVGMVTEDVVHTSTHRVEDALLPVDGDILTPRDGTHIVQTERVVVVLVSQEDSIDTIDTETCGLVVEVRATVDEDTLPTLGDDEGRGAQTTVTGIRAMAHRAATAYLGDTSAGARTEKNYLHVSRRESYHGKEKPRLTEREGAW*
Ga0110913_1007707	Ga0110913_10077071	F022002	GLALTLGLLLALLLSLPSYAQDGQSKVPINRTISGFTLGVTTPAEARAIIQRQGGKIIAEEGAQNGGDDGGYAFTGFKYARRPTSLITLHFYKGHLRKIAFVFDKLDVLEQIESELENKYGMMAEGKETSKMKSKVIFDAFTFLEVVRRFEYEGHVGFDHAYIAYTDAELDRARLAEKESEI*
Ga0110913_1007767	Ga0110913_10077674	F085821	MNDVFERLAPLAQTKKQQTAVAKFIEKGFKFTRQPDAQKFTFLVYDFFVAGNMPAVQLCIDYLVAQGYPTAENEKKFLNWVFMEPVYYLKYFISDASTQKKLHHDLLNLWYESSKRQLLEQDKGKHDEAYINAWNEANVNKTLSIIRSGETIASCKEDVAKHSRTLNDEYEQNVNLLDEYCRALLYTAETTESQQELVAETQSHIALLKDLYKKVNKIK*
Ga0110913_1012213	Ga0110913_10122132	F022002	MSSRLALTLGLLLALLLSLPSYAQDGQSKEPINRTISGFTLGVTTPAEARAIIQRQGGEIEETQAWSDEVVYAITGLKYARRPTLSVRLYFYKGHLRSISFVFGDLKIFEQIESELENKYGTMAEGKATSKMRVKGIADAFTSLEVVVHSFEYDGHVGFAYAYISYTDLELDRAYSAENENEI*
Ga0110913_1012213	Ga0110913_10122133	F022002	MSRRLALTLGLLLALLLSLPSHAQDGRSKVPINRTISGFTLGVTTPAEARAIIQRQGGKIILEVGVQAGSKDASYIVSGLNYARRPTQTVAMFFYKGHLHSIDFIFDGWDVLEQIESELEDKYGKMIESEGMFKKKVIVDAFTSLEVVRTFEYEGHVRINHAYIAYTDEELERARSAEKESEN*
Ga0110913_1014905	Ga0110913_10149052	F043991	MGKKKPSAVDGFDLNGNVIEEANEFDGVLIEEWVNQRSPLKPSWVGRYSDQMHFDLKDGTEVSFYKRPDIVYGDILFAEGIRTILFKCRQKKNLTRFISRVLKLADMGPSSVHPDLRA*
Ga0110913_1015046	Ga0110913_10150462	F080165	MKNKKFILGILLSLTACNNKTKTISTLELEKTIINYKDLPSKVKERVFYGEAMKLGEEDEERFQDFQETNNPKKYEYYTKQDPQLAWVHYPYIRNKKTKQEYSIDKDGPMGGRYIIYGDSLYISNHYNIYEEDSLRYTFTRYILR*
Ga0110913_1020210	Ga0110913_10202101	F101358	MTEKYSASHGAENQASPPLPRQPEHLLTQPITTDGTPKERATHPDTHSIPKRQDVPRHQWNVLRSSGQLDEGWIDTEIIDKGGTVLVRMTKLVNRSNIHQLEKCVPLAVLQEQNIDFTNAYLQRAYGMMIKDGRLQPVADTTHATTSSQEQQTEVLPAQSDNTYDHLGGDSARQLVGSVA
Ga0110913_1049232	Ga0110913_10492321	F070224	YNAPDSIYVASGAVYIPPISGEPIYLLASPLRPVKTRGSKLRTRDWVKVDYSDQNNIIIMGFGDSLVIENFFAYYAAEFPKMQEYKLYYKGTGEEITKEDFDSIKFTRMPTALRELKKYKLPRTKRFSGEVDRWQHPHLFVIEHDKKAGHYYKYRIALVIYMDYNHPEACIIH*