3300008158: Minidiscus trioculatus and Planctomycetes bacterium Co-assembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008158
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0111469 | Gp0116132 | Ga0100217
• Sample Name: Minidiscus trioculatus and Planctomycetes bacterium Co-assembly
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 54320235
• Sequencing Scaffolds: 8
• Novel Protein Genes: 8
• Associated Families: 3

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales	1
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED88	2
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira oceanica	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana	1
Not Available	2

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Eukaryotic Communities From Various Locations To Study Complex Ecological Interactions
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Eukaryotic Communities From Various Locations To Study Complex Ecological Interactions

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: USA: Monterey Bay
• Coordinates
  • Lat. (^o): 36.746
  • Long. (^o): -122.026
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F057890	Metagenome / Metatranscriptome	135	N
F080094	Metagenome / Metatranscriptome	115	Y
F094948	Metagenome / Metatranscriptome	105	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0100217_10042	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	40543
Ga0100217_10929	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales	13636
Ga0100217_11642	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED88	9628
Ga0100217_11760	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira oceanica	9208
Ga0100217_12311	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana	7402
Ga0100217_14037	Not Available	4376
Ga0100217_15525	Not Available	3024
Ga0100217_17168	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED88	2142

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0100217_10042	Ga0100217_1004261	F080094	MKKQTQKDKKVRKLFNQNEVNNIILKSIVKNENLSLIVK*
Ga0100217_10929	Ga0100217_109296	F057890	MVLSSEGLHLLSSVAVWRHDFETINDKNVAMWHCYYIDVINFYIMKENHREWIDDNNKKKEKKKEYSTSDGWDVIRFQVSEEHRLNRTFNTLNDFLDYWFHVYHNRQESSRLEPMYMKQQTKNQSGQGPTGVQQEALERYQKLSYTDKAIYRAVAKEYFRKKK*
Ga0100217_11642	Ga0100217_116429	F057890	MVLSSEGLHLLSNVAVWRHDFETINDKNVAMWHRYYTDVINFHIMKENHREWIINNKKKKKKKEYSASDGWDVFRFQVSEEHRINRTFNTLNDFLKYWFHEYNNRQESSRLEPMYMKKQTKTQSGVQQEAVERYQKLSYTDKAIYRAVAKEYFRKKK*
Ga0100217_11760	Ga0100217_117601	F057890	MVLLSEGLHLLSNVAVWRHDFETISDKNVALWHRYYTDVISFHIMKENHHREWIINNNNKKNKKKEYSDSDGWDVFRFQVSEEHRINRTFNTLNDFLKYWFHEYNNRQESSRLEPMYMKKQTKNQSGECPTGVQQEASERYQKLSYTDKAIYRAVAKEYFRKKK*
Ga0100217_12311	Ga0100217_123112	F057890	MVLSSEGLHLLSNVAIWRHDFETINDKNVTMWHHYYIDVINYYIMKENDCQRIISNNNKKEYSTSDGWDVFRFQVSEEHRINRTFNTLNDFLKYWFHEYNNRQESSRLEPVYMKKHTKNQSGECPTGVQQEASERYQKLSYTDKAIYRAIGKEYFRKKK*
Ga0100217_14037	Ga0100217_140371	F094948	MTAALVLDCHYNIVHVLSSPQTITTGVGVAICWADLEILAQSEARCRPTHGCKSATSTSTKVQQVFINLLG
Ga0100217_15525	Ga0100217_155253	F057890	MVLSSEGLHLLSNVAVWRRHDFETINDKNVAVWHRYYIDVINYYIMKENDCQLIISNNNKKEYSTPDGWEVFRFQVSEEHRINQTFNTLNDFLDYWFHEYNNCQESSRLEPVYMKKQTKNQSGECPTGVQQEASERYQKLSYTDKAIYRAIGKEYFRKKK*
Ga0100217_17168	Ga0100217_171681	F057890	MVLSSEGLHLLSSVAVWRHDFETINDKNVAMWHCYYIDVINFYITKENHREWIDDNKKKKEKKKEYSTSDGWDVIRFQVSEEHRINRTFNTLNDFLKYWFHEYNNRQESSRLEPIYMKKHTKKQPGQGPTGVQQEALERYQKLSYTDKAIYRAVAKEYFRKKK*