3300008156: Minidiscus trioculatus Co-assembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008156
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0111469 | Gp0116134 | Ga0100218
• Sample Name: Minidiscus trioculatus Co-assembly
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 56915624
• Sequencing Scaffolds: 16
• Novel Protein Genes: 17
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	4
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Naviculales → Amphipleuraceae → Amphiprora → Amphiprora paludosa	1
All Organisms → cellular organisms → Eukaryota → Opisthokonta	1
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira	2
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana	2
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira oceanica	1
All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED88	3
All Organisms → Viruses → Predicted Viral	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Marine Eukaryotic Communities From Various Locations To Study Complex Ecological Interactions
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Eukaryotic Communities From Various Locations To Study Complex Ecological Interactions

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: USA: Monterey Bay
• Coordinates
  • Lat. (^o): 36.746
  • Long. (^o): -122.026
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019658	Metagenome / Metatranscriptome	228	Y
F051162	Metagenome / Metatranscriptome	144	Y
F057890	Metagenome / Metatranscriptome	135	N
F064770	Metagenome / Metatranscriptome	128	Y
F094948	Metagenome / Metatranscriptome	105	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0100218_10053	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	37592
Ga0100218_10467	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales	18504
Ga0100218_10477	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	18391
Ga0100218_10911	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Bacillariophyceae → Bacillariophycidae → Naviculales → Amphipleuraceae → Amphiprora → Amphiprora paludosa	13906
Ga0100218_11145	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	12083
Ga0100218_11349	All Organisms → cellular organisms → Eukaryota → Opisthokonta	11026
Ga0100218_11530	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira	10217
Ga0100218_11665	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana	9649
Ga0100218_12004	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira oceanica	8449
Ga0100218_12507	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira	7247
Ga0100218_13394	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta → Coscinodiscophyceae → Thalassiosirophycidae → Thalassiosirales → Thalassiosiraceae → Thalassiosira → Thalassiosira pseudonana	5596
Ga0100218_13875	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED88	4904
Ga0100218_14413	All Organisms → Viruses → Predicted Viral	4311
Ga0100218_14936	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED88	3780
Ga0100218_16194	All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta	2900
Ga0100218_17064	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium TMED88	2440

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0100218_10053	Ga0100218_1005338	F064770	MDFNLKTYKRSRIKHYFKRINFFFFFHGTSLNNES*IKTEQVFVNYGLKYFRVLNKLMINTLKNSIFKNLVVLIHGPIILLSNPNTKLTFKESKSLNPLISLLSFRLNNKIYSKKQIKNLNRMSYLENISIFHNSMKTCIKLPYYKFKNKRTPVVSK*
Ga0100218_10053	Ga0100218_1005357	F019658	MKINRIKSQNYKLFKYNLLKLQIYSNESIFDLSNFSNSTLEQIEAYLKQVLKIIFEYHV*QFKILFIGFPVVCKMKQMKLINFTNHNFISEKS*VSGVFRNRFSILTYLKLIQLQSFSKSLKLLLTIKTKPHLVVVFNQKVELNTINEFYKSGIPILSFN*NSFDTLKVAYHTLGNFNFIEKNIKLTFFFLLYSLLKKTPLKKRRNQNF*
Ga0100218_10467	Ga0100218_1046713	F051162	MPLVKVFTRVGMTKSIPLSSLQSKLCDIWGTKPETTKIILQRVEDWTSDSFHEDVYIDIRAYGKEERTRDFVLDGMKDVQKAFGEFDLLANVRLETYEGERYFHVPPPKK*
Ga0100218_10477	Ga0100218_104771	F057890	MVLSSEGLHLLSNVAIWRHDFETINDKNVAMWHRYYTDVINYYIMKETHREWIDNKNKEKKMKKEYSTSDGWEVFRFQISEEHRINRTFNTLNDFLDYWFHEYHNRQESSNRIEPCYMKKDTKKQSGQGPTGVQQEALERYQKLCYTDKAIYPNQFSYPDIMSGYASFYAQTIGILYPDKLSG*
Ga0100218_10911	Ga0100218_109119	F057890	MALSSEGLHLLSNVAVWRHDFETINDKNVAMWHRYYTDVINFYIMKENHREWIDNNNKNKKEKKEYSTSDGWDVIRFQVSEEHRINRTFDTLNDFLDYWFHEYHNRQESSRLEPIYMKKHTKKQSGQGPTGVQQGALERYQKLSYTDKAIYRAIGKEYFRKRSSP*
Ga0100218_11145	Ga0100218_1114510	F051162	MPLVKVFTRVGMKKSIPLSALQSKLCNIWGTKPETTKIILQRVEDWTADSFNEDVYIDIRAYGKEERTRDFVLDGMKDVQKAFGEHDLVANVRLETYDGERYFHVPPPK*
Ga0100218_11349	Ga0100218_1134910	F094948	MTAAWVPDCHYNIVHVLSSPQIITSGVGGAKCVADLEILAQSEARCRPTHGCKSATSNSIKVLQVFINLLGTQAMPI
Ga0100218_11530	Ga0100218_1153012	F051162	MPLVKVFTRVGMKKSIPLSTLQSKLCDIWGTKPETTKIILQRVEDWTSDSFNEDVYIDIRAYGKEERTRDFVLDGMKDVQKAFGEHDLLANVRLETYDGERYFHVPPPKK*
Ga0100218_11665	Ga0100218_116658	F094948	MTAAWVLDCHYNFAHVLSSPQTTTTGVGAAKHWADLEILAQSEARCRPTHGCKSAASTSTKVLQVFINLLGTQAMPIHQYICQPTSLGGC*
Ga0100218_12004	Ga0100218_120044	F057890	MVLSSEGLHLLSNVAVWRHDFETINDKNVALWHRYYIDVINYYIMKENDCQLIISNNKKKEYSTSDGWDVFRFQVSEEHRMNRTFNTLNDFLEYWFHEYHNRQESSRLEPVYMKKQTKEQSGECPTGVQQEASERYQKLSYTDKAIYRAIGKEYFRKKK*
Ga0100218_12507	Ga0100218_125071	F057890	MALSSEGLHLLSNIAVWRHDFETINDKNVAMWHHYYTDVINFYIMKENHREWMDNNNKKKEKKKEYSTSDGWDVIRFQVSEEHRINRKFNTLNDFLDYWFHEYHNRQESSRLEPIYMKKHTKKQSGQGPTGVQQEALERYQKLSYTDKAIYRAIAKEYFRKRK*
Ga0100218_13394	Ga0100218_133946	F094948	MTAAWVLDCHYNIVHVLSSPQTIATGVGVAKCWADFEILAQSEARYQPTHGCKSATSTSTKVLQVFTDLLGTQ
Ga0100218_13875	Ga0100218_138752	F057890	MVLSSEGLHLLSNVAVWRHNFETINDKNVAMWHHHYTDVINFYIMKENHREWIDNNNKKKKEKKEYSTSDGWDVIRFQVSEERRINRTFNTLNDFLDYWFHEYHNRQESSRLEPIYMKKHTKKQSGHPTGVQQEALERYQKLSYTDKAIYRAIGKEYFRKKSDLLTSDIVDTTQSNRLT*
Ga0100218_14413	Ga0100218_144135	F057890	MVLSSEGLHLLSNVAVWRHDTINDKNVAMWHRYYIDVINYYIMKETHREWIDNKNKEYSTPDGWEVFRFQVSEEHRINQTFMTVNDFLEYWLKVYNSRQESSRLELMYMKKHTKNQTGECPTGVQQEAVERYQKLCYTDKAIYRAIGKEYFRKKK*
Ga0100218_14936	Ga0100218_149361	F057890	MVLSSEGLHLLSSVAVWRHDFETINDKNVAMWHCYYIDVINFYITKENHREWIDDNNKKKEKKKEYSTSDGWDVIRFQVSEEHRINRIFNTLNDFLDYWFHECHNRQESSRLEPIYMKKHTKKQPGQGPTGVQQEALERYQKLSYTDKAIYRAVAKEYFRKKK*
Ga0100218_16194	Ga0100218_161944	F057890	MVLSSEGLHLLSSVAVWRHDFETINDKNVAMWHCYYTDAINFYIMKETHREWIDNKNKEKKMKKEYSTSDGWDVIRFQVSEEHRLNRTFNTLNDFLDYWFHEYHNLQESSRLVPMYMKQQTKKQSGQGPTGVQQEALERYKKLSYTDKAIYRAVAKEYFRKKK*
Ga0100218_17064	Ga0100218_170641	F057890	MVLSSEGLHLLSNVAVWRHDFETINDKNVAMWHRYYIDVINFYIMKENHREWIDNDKKKEKKKKEYSTSDGWDVIRFQVSEEHRINRTFNTLNDFLDYWFHEYHNRQESSRLEPMYMKKQTKKQSGVQQEAVERYQRLSYR*