3300008135: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 764224817 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008135
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053004 | Ga0111463
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 1, subject 764224817 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 128194967
• Sequencing Scaffolds: 22
• Novel Protein Genes: 24
• Associated Families: 21

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	2
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	3
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1
Not Available	5
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae → Cardiobacterium → unclassified Cardiobacterium → Cardiobacterium sp.	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga → Capnocytophaga sputigena	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F022002	Metagenome	216	Y
F041827	Metagenome	159	Y
F043990	Metagenome	155	N
F043991	Metagenome	155	N
F049707	Metagenome	146	N
F054111	Metagenome	140	N
F061927	Metagenome	131	N
F064818	Metagenome	128	N
F070224	Metagenome	123	N
F071327	Metagenome	122	N
F077403	Metagenome	117	N
F077404	Metagenome	117	N
F077405	Metagenome	117	N
F080165	Metagenome	115	N
F085821	Metagenome	111	N
F089056	Metagenome	109	N
F090516	Metagenome	108	N
F095632	Metagenome	105	N
F097526	Metagenome	104	Y
F099454	Metagenome	103	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0111463_1000396	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	24483
Ga0111463_1000640	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	17446
Ga0111463_1000877	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	14117
Ga0111463_1001211	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	11151
Ga0111463_1001793	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	8463
Ga0111463_1001945	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	7952
Ga0111463_1002081	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	7564
Ga0111463_1002810	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	5990
Ga0111463_1002888	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga	5874
Ga0111463_1003150	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae	5509
Ga0111463_1004395	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga	4251
Ga0111463_1005537	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales	3526
Ga0111463_1006382	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	3133
Ga0111463_1006671	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	3010
Ga0111463_1006890	Not Available	2936
Ga0111463_1007201	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cardiobacteriales → Cardiobacteriaceae → Cardiobacterium → unclassified Cardiobacterium → Cardiobacterium sp.	2836
Ga0111463_1013970	Not Available	1580
Ga0111463_1017779	Not Available	1269
Ga0111463_1024759	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	947
Ga0111463_1026905	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → Capnocytophaga → Capnocytophaga sputigena	878
Ga0111463_1030602	Not Available	783
Ga0111463_1031079	Not Available	773

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0111463_1000396	Ga0111463_10003963	F077404	MAQQIIITHKLVAAALSLKEPTQIGNTKNPFAMNILKTAFAFFFALCFMMGANSYAQTTNRINAEASKRELKRNAIYIPPALEEYADTILLHQRFIVENKGNYLYTPFTKDNEPSIPFNYGFLHPLGERFYNSFMGKVDRILRPKEDKGFIILTNYLVVLDDKYAFDTSNKDTSKLADLKYLDFRRIKSDFSYGHPYQGFTDYDRVELSNFVQSYGRQAALETANAWVMASYPFSLQSTKFEKLYTRGRKLILTDGKTTLYLYFLMIDSVAHNFDTEVLPYIKGVFHFNRIR*
Ga0111463_1000640	Ga0111463_100064011	F095632	MTMSFKETTGYKVVSLVASTSASITAGAVVGALCPPAGVVLTAIYGLGSSVLGTYVGDKAGRQYAETLADTIDSMKTTSTK*
Ga0111463_1000877	Ga0111463_10008774	F090516	MKSNLSVELFLAFERYFIENDEDVSLDKISSGFTNVVLGIEFLPQNMTEDVERKKKLLKKYGFSSATALAEDFRERVLNYDEPIPEDFEKDGVGYVYTFISGYDAFYKRMYVFGIHCFEDCFEVTYFDLDNDAGAGDYYKDLEFYSQAKGYRWLNPESSYYGDVLAWEALNKLATEIYFHLEDKLDVKLDIEPIPVGEKVTPTQEHLAKFLAFCGVEQEVIDENKERLLKALEEYTPDKQEYISDVVTWITEYSNEIERALPVTGIISDYGNTSFSDWKFSAEDLEECVLNLVDFDEWEWEYPADTYGSDLFPYMRKQLYCYGFWLCNLDTGADEYVFLLFPEEDMPEIMRLTKILGIPLKAYFK*
Ga0111463_1001211	Ga0111463_10012112	F043990	MIKKLGIIFTFGVIILGIVVYANHKIERSWIEGEFGVNMSNMNIDEKYREEEWAPNGDGEKTIILTYDQLGSSFTKLNKLPIKEDLPPNGIPKQFLNNTNGYYKYIGDENDDWNFGMLIVDTTRKEICIYNQIL*
Ga0111463_1001793	Ga0111463_10017938	F049707	VVSEYKSPHNDGHDPYILIWEYGNDIRRAEFSERWAEYDDTGWTVWYFRLVDGGVMTFSAREWEQKDDVNHLTTIWMRPSLYDIERKTS*
Ga0111463_1001945	Ga0111463_10019452	F018385	MAEYVNRWDPYSELSIEKDRDPVLDDHLIYGTNVEHYTLTVYSTEGRVSKYWNARILKDDLGRCRIACPREGKILCFSWFDWDAHMFTHDGMNELVFAPKLNSRSPQSLWNKKEVK*
Ga0111463_1001945	Ga0111463_10019457	F043991	MGKKKPSAVDGFDLNGNVVEEANEFDGVLIEEWVNQRSPIKPSWVGRYSDQMHFDLKDGTEVSFYKRPDIVYGDILFAEGIRTILFKCRQKKNLTRFISRVLKLAEMGPSSVHPDLRA*
Ga0111463_1002081	Ga0111463_10020815	F080165	MKNKKFLLAILLNLTACNNKTKTISTLDLEKTIIDYKDLPSKVKERVFYGEAMKLGEEDEERFQDFQETNNPKKYEYYTKQDPQLAWVHYPYIRNKKTKQEYSIDKDGPMGGRYIIYGDSLYISNHYNIYEEDSLRYTFTRYILR*
Ga0111463_1002810	Ga0111463_10028106	F041827	NETPAPQNEKLVLLDKLREGSTVTFQYKNRNEIESVNIDGVGNSDIDYEYDTYGRIVKERRFHRRYDYGETNITYQYDGQGRLASSHAISTEFYPGTGLTPRCSVEKKHTYTYQGNKVIVKIEMGADTCSAIPETGKEKTITLLVENGRVTKTFDEQGNIKQTIEYYNTKNALRNIKGFPALVVEFYIRPLSYELPYYNHGIERIEDLRYIDNIKTRDFHEDDYILYEYTDDKGNSYDGDYPTKIFVFDKSHNDPTYSHQLWMFNASRYYIKEE*
Ga0111463_1002888	Ga0111463_10028883	F064818	MDKDEFLKKLIAFIADNSSELHPKVFKNKIRFGINKSSYTEMQFDYSQNYEGFYLQLASYNKEVGDFFEQEMGNAFLKMLEDKSKEFRNLFFVQNSFQISHYYYGFPIMTNDNTGHLYPEMGTTIFNDVLRNLQANHFKFIQAAEVLSPDLLHYIKRFPSCFFNTALVALLIIEKKLLSLDDERVQGLFEYDNMVTKNECKLFSPFDLIFGRKNYQQTAKQRILQRK*
Ga0111463_1003150	Ga0111463_10031503	F061927	MKNSIFILSAMFILGACSSDSAQKVTEKIKNAYSDGLRKTFIEEGVKSCIENSGLKESEAREYCECAMNKLNESLSNDEIVDISMDNPPKDLDERVDKAIDSCIGE*
Ga0111463_1004395	Ga0111463_10043953	F054111	MVFKNLEKASMDKPLDNITHEVFLKLMEHLKNLQEFTFLEYIMAPEADIFYFNFMEKTVKIKWDLDYGLSLETKSLSTSDKDLFLNILHKEILSLENQ*
Ga0111463_1005537	Ga0111463_10055372	F070224	MKRLLFLLLTLLHCTAWSQGYNAPDSIYVASGAVYIPPVSGEPIYLLASPLRPVKPRGSKKRTRDWVKVDFSDQNNLIVRKVGDPLVIENFFAYYAAGFPEMKEYELYYKGTGEEITKEDFDSIKFTRMPTALREIKKYKLPRTRRTLREVDRWQHPHLFVIEHNKKADRYYKYRIALVIYMDYNHPEACIIH*
Ga0111463_1006382	Ga0111463_10063825	F089056	MNVFCKIILPLLCIISCSKRKEADNTKTLEKNHTFSLWNNDSLGCKHERTIEMGEELYNTFKKSNKNDSILLKEYLGTPNRRFKDKEEIVFMYYINSCCDNGQLLEECDVSFIAITFTNKNEILFRKGIQ*
Ga0111463_1006671	Ga0111463_10066712	F071327	MEDLFNSVYSTHKGISFSTVVVFGAFIFLLLQVHLSYKGTISEVLRKTAFFSMMLLYIQGILGVFLGIYSPEFSEASGFSSFFKLFEYGIIILICAGMITYVYTYLKKHQKLNLKIVIIALVSALLFEYAYPWRLIFG*
Ga0111463_1006890	Ga0111463_10068901	F022002	EPIDRTISGFTLGVTTPAEARAIIQRQGGEIEETQAWSDEVVYAITGLKYARHPTLSVRLYFYKGHLRSISFVFGDLKIFEQIESGLENKYGTMAEGKATSKMRVKGLADAFTSLEVVVHSFEDDGHVGFAYAYISYTDLELDRAYSAENENEI*
Ga0111463_1006890	Ga0111463_10068902	F022002	MSRRLALTLGLLLALLLSLPAYAQDGQSKVPINRTISGFTLGVTTPAEARAIIQRQGGKIIRTEGTQAGSDEQAYAVKGLKYARRSTLLAGLYFYKGHLRRIFFIFDDLDVLEQIESELEDKYGMMIESEGTSKSKSKGFFDAFTTLEVVRNFEYEGHSMFKDAYIAYTDEELDRARSAEKESEI*
Ga0111463_1007201	Ga0111463_10072015	F097526	MAKDVAGTDMTTNDTKAITIYTQDDYRQLCERLDDDTVTALLHAHIRAFAADGNRQRLNRLTEAMRIAGEMEKAGRNEHPDPAEQKRRARWDSNLAGLQQQARMAHCEIVNADNAAVSQLTQQCEKNGSRDTAIPLPRDDYGFAAAVRDFPLSETQTALLWRMALLTIAEMTDTAPSMVACYLNGTGGEHLGRALAGKTVYPVTVVSNLAWLLHEQHKSGQLQRDLSHTAKLLRLTEVAEMRGAMPHRAVWQADNPKSRQSTLEPGE*
Ga0111463_1013970	Ga0111463_10139702	F077403	MSAIYAEERISVHFEVRWHRERNPMDTLSRELDVSYLHVVYQNRTDTAYYLVRQDQSNWIFPRLRYYTVIEAIPRTEELSLTHYVPRWATFMLHARGAELQKRKVLTRQVLLQDQAWEVELEPSILDGKPKPRITYEEGISNWSEQAYYLQGYLYYLMNPQQAHDWYQVTYLQGHAMHSVATEAVVTEGELRPYVHRLAFLPARSRREYVYSLLAFRLIHGRWHFMLPDWQASARLRDEGTSLNVYLLRDQEAPTSPQGYALPDRYEGYQLYQGLVRGDSIWIEM*
Ga0111463_1017779	Ga0111463_10177791	F077403	EVRWHRERNPMDTLRRELDVPYLHVVYQNHTDTAYYLVRQDQSNWIFPRLRYYTVIEDGSRPEKYNLTYYVPRWATYPLKGAGRSVRERRHYTHHVLLRDQAWEVELEPSIVDGQPKPRIAYGEGMDNWSECAYYLQGYLYYLMTPQLDHDWYQVTYLSEHMEYSVGMEMVGTEGTLKPFVHRLAFVPAHSRREYVYSLLAFAVIHGRWQFLLPDWEASGRLRDECIPLNVYQLRGKGSTASTPSGYPLPEHYEGYQLYRGWVRGDSISIKM*
Ga0111463_1024759	Ga0111463_10247591	F099454	MKASKLLWAVVMALTFVLTSCDRVTDEPTIEGKMNKFFDSQAQQKSFRVLTASGKPYNHKIDWHIIGIRDSKSDTYLTKKVDTLSNGDLKISYDWISFTVREKKSVIDVEVQKNETGEDRSVKFVAQDNHKGLASPSMKVIQQAK*
Ga0111463_1026905	Ga0111463_10269051	F085821	MSNIFEQLAPLVETKKQQTTVAKFIEKGFKFTRQPDAQKFTFLVYDFFIAGNMPAVQLCIDYLVAQAYPTAENKKKFLNWIFMEPVYYLKYFISDASTQKKLHHDLLNLWYESSKRQLLEQDKGKHDEAYINAWNEANVNKTLSIIRSGETIASCKEDVVELAESLNDEYELNISLLYEYCRALLYTAETTESQQELVAETQSHIALLKDLYKKVNKIK*
Ga0111463_1030602	Ga0111463_10306021	F077405	GRALPTELFPRLLVAKQRGVFYGFISLCQIKFVKKVFDCLKIVQK*
Ga0111463_1031079	Ga0111463_10310791	F022002	MSRRLALTLGLLLALLLSLPSHAQDGLSKVPINRTISGFTLGVTTPAQARAIIQQLGGKIEGTQAGSDDEVYTVTGLKYARRSVFLASLQFYKGHLRRILFAFKDLDVLEQIESDLEEKYETMAEGKETSKTKRKYIFDAFTSLKVVRSFKYEGHVGFEYAYISYTDLELDRAYSAEKESEI*