3300008134: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 159571453 reassembly

Overview

Basic Information

• IMG/M Taxon OID: 3300008134
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0063646 | Gp0053007 | Ga0111464
• Sample Name: Human supragingival plaque microbial communities from NIH, USA - visit 2, subject 159571453 reassembly
• Sequencing Status: Permanent Draft
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 127150278
• Sequencing Scaffolds: 19
• Novel Protein Genes: 24
• Associated Families: 21

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	4
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	4
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	6
Not Available	1
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia	2
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	1
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase
• Type: Host-Associated
• Taxonomy: Host-Associated → Human → Digestive System → Oral Cavity → Supragingival Plaque → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Host-associated → Animal → Animal surface

Location Information

• Location: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018385	Metagenome	235	Y
F022002	Metagenome	216	Y
F036281	Metagenome	170	N
F040149	Metagenome	162	N
F043991	Metagenome	155	N
F045567	Metagenome	152	N
F047127	Metagenome	150	N
F049707	Metagenome	146	N
F051213	Metagenome	144	N
F053092	Metagenome	141	N
F055792	Metagenome	138	N
F059076	Metagenome	134	N
F061926	Metagenome	131	N
F067847	Metagenome	125	N
F071329	Metagenome	122	N
F081454	Metagenome	114	N
F089056	Metagenome	109	N
F092231	Metagenome	107	Y
F094006	Metagenome	106	Y
F095632	Metagenome	105	N
F097490	Metagenome	104	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0111464_100016	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	137753
Ga0111464_100025	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	115867
Ga0111464_100069	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	71531
Ga0111464_100100	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	59784
Ga0111464_100118	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	55988
Ga0111464_100177	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	45780
Ga0111464_100196	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	43426
Ga0111464_100431	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Weeksellaceae	28116
Ga0111464_100805	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas → unclassified Porphyromonas → Porphyromonas sp. oral taxon 279	18552
Ga0111464_100904	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	17099
Ga0111464_101422	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	12145
Ga0111464_101861	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	9711
Ga0111464_103090	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	6405
Ga0111464_103173	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	6261
Ga0111464_120185	Not Available	1086
Ga0111464_121470	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia	1018
Ga0111464_133529	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium	648
Ga0111464_133889	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia	642
Ga0111464_138185	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Porphyromonadaceae → Porphyromonas	565

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0111464_100016	Ga0111464_10001689	F055792	MEIASQTLDSTSAVTHRILLLTTQLGESLLASFGAEDGVIAEAMVTRALESNLPIDSTLEEVGPVLIDKGDDGTEAGTTWGRYTLETLQKEGYILFEGSMLPCEARRVDSRSSIKSLDLESRIIGKAMKPVALPHVARLDEGIPLQRIGGLRDLLVTPDVSQADDL*
Ga0111464_100016	Ga0111464_10001690	F040149	VADEGAKELRWKVLIEEQGIPVLFVEVVAWYDGRVSSSEILRSVGIALEREPRLSPVWHYDSEDAIHDFIYDISVPKGHTLTAVRERETVVMQLFNIHRMF*
Ga0111464_100025	Ga0111464_10002524	F094006	MRGTLEPAGPTGALHEPAVSVEAHIGELQAGGIAHRGLFAFGGSNLLAVAELGAEAPHAIDMYDIALCKPLSELFAEELEYAFNFGA*
Ga0111464_100069	Ga0111464_10006940	F059076	MTNKILLLGLLLGGVSINAQNINETKAAGKTGQKVGINTTIPTRTLTIKNSTANDGKPLLRLVDAPIYSKNVKSAMDADLGGNTAATNHYTDYRPLVVDKVGDVYQGLPINNMSILTLTIDNVNGDYIRKFDTGIDYKKYAVTIMNAIFKMPDAGAGKIVMLRAGNGVIPSVDFGGGKYGVTTAPATVLLKKTQLTNNWEIYADYPNIGSYEFSLGSTSAGNVVNGTWVITLLVGKRDAVNFTELNFNQGGSAEGIGNSNTTYATQLQNFLQKLE*
Ga0111464_100100	Ga0111464_10010017	F053092	MQSDQGLILCLTHALLVLGALILEPAEMEDPMDDHTVQLFGILIAKELGIATHRIKADEHVPRDHIPLTLVEGDDIGIVVMIEKVLIGLQDALITTELVAELADTTVIASSDLTDPVAKDTLSEARLLDVFVCIVSYKLRFFRHK*
Ga0111464_100118	Ga0111464_10011834	F061926	MMIKTAKHIKTFLASMLLLIFVMNVSGLFVRLHHQETHQKTEKIAECSDKVCYHKAHLQTKSDCDCGFLCTLNYFYILPEKPQTEIHVNEYFSYFSSYKIFVSERIILLWQSRAPPVFS*
Ga0111464_100177	Ga0111464_10017743	F089056	MNKKMNVFCKIILPLLCIISCSKRKEADNTMVLEKNHAFSLWNNDSLGCKHERTIEMGEELYNIFKKSNKNDSILLKEYLGTPNRRFKDKEEIVFMYYINSCCDNGQLLEECDVSFIAITFTNKNEILFRKGIQ*
Ga0111464_100196	Ga0111464_10019620	F049707	VVSEYRSPHNDGHDPYILIWEYGSEVQQAEFTERWAEYEPDTGWTVWYFRLDDGRVMKFRALEWEQRDDVNHLTTIYFTPKKEQQ*
Ga0111464_100196	Ga0111464_10019641	F095632	MSFKETTGYKVVNFVASTTASITAGAVVSALCPPAGVALTVVYSLGSGVLGSYVGDKAGQQYAENFAETIDSIKTPSNN*
Ga0111464_100431	Ga0111464_10043110	F047127	MKKTFAFILLSIISLAKAQLTDIRYIPVISTDTISTKANLYPHVLSKNKFNPLVFENGFKVGERREAVRLWDKDIFYLEFIDRKMNKRVFRQMPELKKNGKLFEIMLQGDVSWYRRYFSYRADTWDANYEHEDYFVKGDEIVNIPVKGRYKKKLKALLSDKPEIAKEVDQMVGDRDIKEILEKYNSK*
Ga0111464_100431	Ga0111464_10043124	F081454	MKAFKFILLLFITSASLVFGQEKRYFFKHEFQPNSKYLIKYKIDMDGGYKFVGNKEVLDKIGMDGVKMTINSDIESTFSTQKKQGENVPFILEYTKYFYEAEINGEKVNRKIPLQGVKLIGDIVNGKKMEVKNVEGNIDEDTKKILIESIKQFSAIDTHFPKEGLKIGDSFDMVIPYKQSIPQVGDIEMKMNVKYKLLKVEKEEAYFDILIDFVMGDKNVKNMDLSASGDGKGFLLFDMKNNYFTSQNIDMTINLKLKTELLTLENTSKAKSVVTQQKIK*
Ga0111464_100805	Ga0111464_10080510	F045567	MVTEDVVHTSTHRVEDALLPVDGDILTPRDGTHIVQTERVVVVLVSQEDSIDTIDTETCGLVVEVRATVDEDTLPTLGDDEGRGAQTTVTSIRAMAHWAATAYLGDTSAGARTEKNYLHVSRRESYHGKEIPSLSSERGCVVERVVR*
Ga0111464_100904	Ga0111464_1009045	F036281	VITLIKVDEGPVDIYELRMQYLAKLKETDGVMLPTFIYRNKDLFVTEFKPTCDDQWIMYMTNADGLITKMRIKNGDLMSNGSVLFLAEERKTYNAKEYYDYWTAREGKPAPFFYESRQYHVKSFMRIPGSTDLWITAEREHGHWYTFRMSDDQKSKFTRHTMTNEKGHQTYDWVLKNVEWAADTIRYF*
Ga0111464_101422	Ga0111464_1014222	F095632	MTMSFKETTGYKVVSLVASTSASITAGAVVGALCPPAGVVLTAIYGLGSSVLGTYVGDKAGRQYAETLAETIDSLQTPQTN*
Ga0111464_101861	Ga0111464_10186113	F049707	VVSEYRSPHNDGHDPYILIWEYGNDIRRAEFSERWAEYDETGWTVWYFRLVDGGVMTFSSREWEQKDDVNHLTTIWMRPSLYDIKRKEN*
Ga0111464_103090	Ga0111464_1030906	F067847	MFSHIVRVQGFFDDEPTTKKLYFHLSRREMFDFIKRYDNITNFNAWVEAAIANNDLYTMMEFFDDLIGSAYGERQGERFIKNAQIKESFLNSPEYEELFDQLMNKPNLVREFYNGILPEKIMKQVKDDPKYKELDDKLKETELNNL*
Ga0111464_103173	Ga0111464_1031732	F018385	MMADLFNSWLPYQELSIDKDRDPVLDDPIIYGNDVRHFTVTVYSTDGRVKKYWNARVLKDDMGYCRVACPRDGKILCFNWIHWTAYMFTHEGLNDLVFMPGNNRKTITQLYSNK*
Ga0111464_103173	Ga0111464_1031733	F071329	MRPLYSKGTLMLPVAKIVLSGLTSIGAGMIASKLTKPLVSNASGIAKILLWFGSVGTGLAASAIVAREVEKQFDETVKAVKEARDHIEIED*
Ga0111464_103173	Ga0111464_1031735	F043991	MSKKNPSVIDYFNLNGDLNEEASEFEGVKLEDYIDKRSSFKPSWTGRYGEHMHFDLESGVEVSFYKQPNVVYADILFYEGIRTILFKCRQKKNLTRFISRVLELAQGEPSNIHPDFRA*
Ga0111464_120185	Ga0111464_1201851	F022002	LLSLPSHAQDGRSKVPINRTISGFTLGVTTPAEARAIIQRQGGKIILEVGVQAGSKDASYIVSGLNYARRPTQTVCMFFYKGHLRRIVFIFNDLDVLEQIESELEDKYGTMAEGVGTSKMKSKVVFDAFTRLLVVRGFKYEGHVGFKDAYITYSDDELDRARSAEKESEI*
Ga0111464_121470	Ga0111464_1214702	F092231	MIIFPPQEFITWTNTLVQFPWPIQLNDFPPYAEKLGWKPTSLPDEFGVCPDNDDEITILSSDRDGNVRNLFLYMASNEAEDDEGAAELNDHFVSCVAAGRKAWGEPFLLEAGDGPGVTWRFPGDMFTQVTNGSRAVLFNFFTPEGRRQFL*
Ga0111464_133529	Ga0111464_1335291	F097490	LKKTQKMNKKMNVFCKIILPLLCIISCSERKEIEVYNMKIDENKKEVLVEIRNNTENNYYLLSPIVSIMAKHLQYIDGEMIEGQIHHKKLDSIVCSVCIWDDICKEEYYAMRDIVLLPKKSVKKIKYKYDNEEYIEIETVHIGFPYNGYYNEIGKKMQFMLKKKLDSSNIIKGYEFYNKDIETMTIKM*
Ga0111464_133889	Ga0111464_1338891	F092231	MIIFSPQDFITWANMLVQFPWPIQLGDFVPYAEQLGWKPTSLPDEFSVRDDEHVTLGDDEAGSICELFLHMASNETEDAEGAAELNDHLVSCVAAGRKAWGEPFLLEAGDGPGVTWRFPGDMFTQVTSGSRAVLFQFFTPEGRWYFL*
Ga0111464_138185	Ga0111464_1381851	F051213	MNLYKILGALILALSFVFTSCDWVSNEPTIEGDHFKYFDSSAQRKSFRVVNALGKRYNHKVDWHIVGITQLGLKTYLTEKVDTLSNGDLKISYDWVSFTVKENKSVIEVEVQKNETGQARSVFFATRNSRYQAHLPNMI